dnase1 (dnase1l2)


Basic Information

Item Value
gene id dnase1
gene name dnase1l2
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 28814118 ~ 28821841 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007245547.3
AGAACTCCTCTGGTgagaacaaacaaataaaagggtTATTAGGACAGAGGGTCATAAAACCTTACACCGGGATAACCTTGACATCTCCTGTAGGTATGTATTTCCGAACAACCATGAAGTGCACTCTTAGATGCCCTTCCAATTGAGAAAACATGATGCAGGGCCCTTTTAGTGCCCACCCTGGTGTTTGTTAAGTgcattgtgaaaaaaatatgaattgttttctttgtgtaaTAAATATTTCTAAGGATTgcataataatgaataataaggattgcataataatgtaatgttaagTCAATAATAAAGACAGTTTTATTGTACAGGGTGAAACACAGGTTGTtgcatgctgttttttattgttttgtccaCCCCTGTCTCAGCTAGAAATATTAACTGCATTTCACCTAATGTTTGTTCatttccaacacacacacacacacacactctctgaaaCAGCAGCTGCAGTGGGCCATTTCATTCCCACACAACTTGTAAATAAAAACTCTCCTGAAAATCTGATACCATGGTTAAGAGTGCCAGTACTGAAAGAGCTTCTCTGTGGTTCTGCTGGCCTTCCTGAGACACGGTCATAGTCTTTCTAGACGAAGCAGAACTCAACAGCAGGATGAAGACTGCAGCCGTTATTGTGCTGTTCTTGCTTTCTGTGCATCTGGTCAGCTCCTTACTTATCGGGGCTTTTAACGTGCAGACGTTTGGCAACAAAAAAGCATCCAATGCAACACTGCTCGAATATATAAGTACAATCGTGCATCGGTACGATATTGTTCTCATCCAGGAGGTGAGAGATAACGATCTTTCTGCGACGAACAGACTGATGCAGCAGGTGAACAAAGGATCTTCTCCATACACATACGATCACATCGTCAGCGAGCCACTGGGAAGGACCACCTACAAAGAGAGATACCTCTTCATCTACAGGAATGAGAAAGTGTCAGTAGTAAAGAACTTCACCTATGATGATGGATGTGAACCATGTGGAACAGATACGTTCATACGAGAGCCGTTTGTGGTGATGTTCTCTTCCAAATACTCAGCCGTGCAGAACTTTGTGCTAATCCCGCAGCACACCTCACCGGACTTTGCAGTGAAGGAGGTGGACGCACTGCACGATGTGGTGGTTTTCACCAGGGAGCACTGGAACACCAATGACATCCTGCTGTTGGGGGATTTCAACGCAGGCTGTAACTACATTAAAGCCAAGGACTGGCCCAACATTCAGCTGTACACCGACAAATCATACCACTGGCTAATCCCCGACACTGCAGATACTACTGTCTCACACACAACCTGCCCCTACGACAGGATTGTATCCACTGACGACATGATGAGAGGCGTGGCTTCTGACACAGCACAAGTCTACGACTTTATGGCTGACCTGGGATTAAGCCACAGCTGGGCCCTGGCTGTCAGCGATCATTTTCCTGTTGAGGTGCAGCTCACCTGAGAGACGCTGAGATTCTATAATAGGAAAtaagttcattaaaaaaagccaataaaaagtacaatatacagAGCCtataaaaatattcagcccTTGGGTCACTATAATTTGGCTTTTACACAAGTATTTTCCAAACCAACCAATTCAACAAACCAAATCTTTACCAAATTCTACAACAAATCTTTAACAAActgtgtgcaggatctacagggcAGCCTGCAACAGTTCTACACAGAACCTGTATGCCCCTACTCCCAACCGTACATGTTTCATCTTGCATCCAGACTAGAGGCAATGTTAATACTGTAATCACTAGATATATGTTGTCAGTGAGTATATTAACTAGGGTTGTCAAGGTTAAAGTGACAATGCAATACATTTGGAACCAGTAAAGCTTTACACTACCATGTTTGACCCCAACCTCTGCTGTAACCTGCCCCTTCCCTACCCTGCCTTTTTTTCTAGAGCAGTTTGCGTGTGGCGAAAATGTGATCTGGCCTTAATCCGACTCAGCTATCAAAGATACTTCCTTATTTTTAACTGAGCTAAACTGTTGATTAGGTGcaatttaatctgatatattagccagaaaaTATActgctaagaaaaaaaaattgtatcttCTGccccatgctgtttacacatgagGTTTGTGCTGCGTTAACTGCTCACATCTGCGCTgcatgtcccattgaaaacactgtttgaaaacacagcagcaaatttacagcaaagtttttttttaaagaagtgcgattaatcacagttaatcgcagaatattgttgtgattaatctgatattTGACACCACTAGTATTAACACTTAACAACCTTACATAATCTTTACATTAATACAGAAAAGACAGCTAGTTACACaaagatacaaaatacaagTGAACCCCTCAAAGGAAGGTAACATGGAGGGAATGACAACACACTGACAGCATGTGTAAGAAGGGGACACACGTATACAAACACATTGAGGCAGGAGACAGTGTTAAATTAGTGAAgattatatgtattattcaaCAATATTGCACTGTCCAAACACCAGATAAATCTACAGAAAAGCAGAAGAAAGGTGTGATTTGTTTAATGAACATTTGGCCCAGTTATTTTTTGACGGCCAATAACTCTGGCATTATTAACACTGTACAATCCAATGTAATGCAATACAATGACACTGTGG
>XM_022675889.1
aaagaaatacaaagtGGTTAATATGATTAGTGGAGCTAATATAAGACAGACAGCCAATGTAGAATGTAGAAACTTTCTTCAAGACATTCCTCAGACCTGATTTGCTAATTCATTCTAAGTAATTGATTCTAATAGGATGAAGACTGCAGCCGTTATTGTGCTGTTCTTGCTTTCTGTGCATCTGGTCAGCTCCTTACTTATCGGGGCTTTTAACGTGCAGACGTTTGGCAACAAAAAAGCATCCAATGCAACACTGCTCGAATATATAAGTACAATCGTGCATCGGTACGATATTGTTCTCATCCAGGAGGTGAGAGATAACGATCTTTCTGCGACGAACAGACTGATGCAGCAGGTGAACAAAGGATCTTCTCCATACACATACGATCACATCGTCAGCGAGCCACTGGGAAGGACCACCTACAAAGAGAGATACCTCTTCATCTACAGGAATGAGAAAGTGTCAGTAGTAAAGAACTTCACCTATGATGATGGATGTGAACCATGTGGAACAGATACGTTCATACGAGAGCCGTTTGTGGTGATGTTCTCTTCCAAATACTCAGCCGTGCAGAACTTTGTGCTAATCCCGCAGCACACCTCACCGGACTTTGCAGTGAAGGAGGTGGACGCACTGCACGATGTGGTGGTTTTCACCAGGGAGCACTGGAACACCAATGACATCCTGCTGTTGGGGGATTTCAACGCAGGCTGTAACTACATTAAAGCCAAGGACTGGCCCAACATTCAGCTGTACACCGACAAATCATACCACTGGCTAATCCCCGACACTGCAGATACTACTGTCTCACACACAACCTGCCCCTACGACAGGATTGTATCCACTGACGACATGATGAGAGGCGTGGCTTCTGACACAGCACAAGTCTACGACTTTATGGCTGACCTGGGATTAAGCCACAGCTGGGCCCTGGCTGTCAGCGATCATTTTCCTGTTGAGGTGCAGCTCACCTGAGAGACGCTGAGATTCTATAATAGGAAAtaagttcattaaaaaaagccaataaaaagtacaatatacagAGCCtataaaaatattcagcccTTGGGTCACTATAATTTGGCTTTTACACAAGTATTTTCCAAACCAACCAATTCAACAAACCAAATCTTTACCAAATTCTACAACAAATCTTTAACAAActgtgtgcaggatctacagggcAGCCTGCAACAGTTCTACACAGAACCTGTATGCCCCTACTCCCAACCGTACATGTTTCATCTTGCATCCAGACTAGAGGCAATGTTAATACTGTAATCACTAGATATATGTTGTCAGTGAGTATATTAACTAGGGTTGTCAAGGTTAAAGTGACAATGCAATACATTTGGAACCAGTAAAGCTTTACACTACCATGTTTGACCCCAACCTCTGCTGTAACCTGCCCCTTCCCTACCCTGCCTTTTTTTCTAGAGCAGTTTGCGTGTGGCGAAAATGTGATCTGGCCTTAATCCGACTCAGCTATCAAAGATACTTCCTTATTTTTAACTGAGCTAAACTGTTGATTAGGTGcaatttaatctgatatattagccagaaaaTATActgctaagaaaaaaaaattgtatcttCTGccccatgctgtttacacatgagGTTTGTGCTGCGTTAACTGCTCACATCTGCGCTgcatgtcccattgaaaacactgtttgaaaacacagcagcaaatttacagcaaagtttttttttaaagaagtgcgattaatcacagttaatcgcagaatattgttgtgattaatctgatattTGACACCACTAGTATTAACACTTAACAACCTTACATAATCTTTACATTAATACAGAAAAGACAGCTAGTTACACaaagatacaaaatacaagTGAACCCCTCAAAGGAAGGTAACATGGAGGGAATGACAACACACTGACAGCATGTGTAAGAAGGGGACACACGTATACAAACACATTGAGGCAGGAGACAGTGTTAAATTAGTGAAgattatatgtattattcaaCAATATTGCACTGTCCAAACACCAGATAAATCTACAGAAAAGCAGAAGAAAGGTGTGATTTGTTTAATGAACATTTGGCCCAGTTATTTTTTGACGGCCAATAACTCTGGCATTATTAACACTGTACAATCCAATGTAATGCAATACAATGACACTGTGG
>XM_022675891.1
AGAACTCCTCTGGTgagaacaaacaaataaaagggtTATTAGGACAGAGGGTCATAAAACCTTACACCGGGATAACCTTGACATCTCCTGTAGGTATGTATTTCCGAACAACCATGAAGTGCACTCTTAGATGCCCTTCCAATTGAGAAAACATGATGCAGGGCCCTTTTAGTGCCCACCCTGGTGTTTGTTAAGTgcattgtgaaaaaaatatgaattgttttctttgtgtaaTAAATATTTCTAAGGATTgcataataatgaataataaggattgcataataatgtaatgttaagTCAATAATAAAGACAGTTTTATTGTACAGGGTGAAACACAGGTTGTtgcatgctgttttttattgttttgtccaCCCCTGTCTCAGCTAGAAATATTAACTGCATTTCACCTAATGTTTGTTCatttccaacacacacacacacacacactctctgaaaCAGCAGCTGCAGTGGGCCATTTCATTCCCACACAACTTGTAAATAAAAACTCTCCTGAAAATCTGATACCATGGTTAAGAGTGCCAGTACTGAAAGAGCTTCTCTGTGGTTCTGCTGGCCTTCCTGAGACACGGTCATAGTCTTTCTAGACGAAGCAGAACTCAACAGCAGGATGAAGACTGCAGCCGTTATTGTGCTGTTCTTGCTTTCTGTGCATCTGGTCAGCTCCTTACTTATCGGGGCTTTTAACGTGCAGACGTTTGGCAACAAAAAAGCATCCAATGCAACACTGCTCGAATATATAAGTACAATCGTGCATCGGTACGATATTGTTCTCATCCAGGAGGTGAGAGATAACGATCTTTCTGCGACGAACAGACTGATGCAGCAGGTGAACAAAGGATCTTCTCCATACACATACGATCACATCGTCAGCGAGCCACTGGGAAGGACCACCTACAAAGAGAGATACCTCTTCATCTACAGGAATGAGAAAGTGTCAGTAGTAAAGAACTTCACCTATGATGATGGATGTGAACCATGTGGAACAGATACGTTCATACGAGAGCCGTTTGTGGTGATGTTCTCTTCCAAATACTCAGCCGTGCAGAACTTTGTGCTAATCCCGCAGCACACCTCACCGGACTTTGCAGTGAAGGAGGTGGACGCACTGCACGATGTGGTGGTTTTCACCAGGGAGCACTGGAACACCAATGACATCCTGCTGTTGGGGGATTTCAACGCAGGCTGTAACTACATTAAAGCCAAGGACTGGCCCAACATTCAGCTGTACACCGACAAATCATACCACTGGCTAATCCCCGACACTGCAGATACTACTGTCTCACACACAACCTGCCCCTACGACAGGCAAGCACCATCCCGAACACCATACACAGAAATGATGAATAAAATGTCTAAAGGAAGACTAGTAGACCAAACACTACTAGAATACCATAGCCACCACTTAGCAatcccttagcaaccacctgggatatagAGCAACACATTTGGTACCACATAGAATGTCATTGCAATTGCCTACTAAcaatttagcaaccacctggcat
>XM_022675892.1
AGAACTCCTCTGGTgagaacaaacaaataaaagggtTATTAGGACAGAGGGTCATAAAACCTTACACCGGGATAACCTTGACATCTCCTGTAGGTATGTATTTCCGAACAACCATGAAGTGCACTCTTAGATGCCCTTCCAATTGAGAAAACATGATGCAGGGCCCTTTTAGTGCCCACCCTGGTGTTTGTTAAGTgcattgtgaaaaaaatatgaattgttttctttgtgtaaTAAATATTTCTAAGGATTgcataataatgaataataaggattgcataataatgtaatgttaagTCAATAATAAAGACAGTTTTATTGTACAGGGTGAAACACAGGTTGTtgcatgctgttttttattgttttgtccaCCCCTGTCTCAGCTAGAAATATTAACTGCATTTCACCTAATGTTTGTTCatttccaacacacacacacacacacactctctgaaaCAGCAGCTGCAGTGGGCCATTTCATTCCCACACAACTTGTAAATAAAAACTCTCCTGAAAATCTGATACCATGGTTAAGAGTGCCAGTACTGAAAGAGCTTCTCTGTGGTTCTGCTGGCCTTCCTGAGACACGGTCATAGTCTTTCTAGACGAAGCAGAACTCAACAGCAGGATGAAGACTGCAGCCGTTATTGTGCTGTTCTTGCTTTCTGTGCATCTGGTCAGCTCCTTACTTATCGGGGCTTTTAACGTGCAGACGTTTGGCAACAAAAAAGCATCCAATGCAACACTGCTCGAATATATAAGTACAATCGTGCATCGGTACGATATTGTTCTCATCCAGGAGGTGAGAGATAACGATCTTTCTGCGACGAACAGACTGATGCAGCAGGTGAACAAAGGATCTTCTCCATACACATACGATCACATCGTCAGCGAGCCACTGGGAAGGACCACCTACAAAGAGAGATACCTCTTCATCTACAGGAATGAGAAAGTGTCAGTAGTAAAGAACTTCACCTATGATGATGGATGTGAACCATGTGGAACAGATACGTTCATACGAGAGCCGTTTGTGGTGATGTTCTCTTCCAAATACTCAGCCGTGCAGAACTTTGTGCTAATCCCGCAGCACACCTCACCGGACTTTGCAGTGAAGGAGGTGGACGCACTGCACGATGTGGTGGTTTTCACCAGGGAGCACTGGAACACCAATGACATCCTGCTGTTGGGGGATTTCAACGCAGGCTGTAACTACATTAAAGCCAAGGACTGGCCCAACATTCAGCTGTACACCGACAAATCATACCACTGGCTAATCCCCGACACTGCAGATACTACTGTCTCACACACAACCTGCCCCTACGACAGGATTGTATCCACTGACGACATGATGAGAGGCGTGGCTTCTGACACAGCACAAGTCTACGACTTTATGGCTGACCTGGGATTAAGCCACAGCTGGGTGAGGAGCTAACAGTAATAACTGCCTGTGCAGCTTAGAAGCTGTGTGTTCAGCTCGGTGGAGCAGTGGACTGTGTGTTAAATGAGGTTTTAATTCTC

Function

symbol description
dnase1l2 Predicted to enable DNA binding activity and deoxyribonuclease I activity. Predicted to be involved in DNA catabolic process, endonucleolytic. Predicted to act upstream of or within corneocyte development and hair follicle development. Predicted to be located in cytoplasm and extracellular region. Predicted to be active in nucleus.

NR:

description
PREDICTED: deoxyribonuclease-1

GO:

id name namespace
GO:0000737 DNA catabolic process, endonucleolytic biological_process
GO:0016888 endodeoxyribonuclease activity, producing 5'-phosphomonoesters molecular_function

KEGG:

id description
K11994 DNASE1; deoxyribonuclease-1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007245547.3 True 2654 mRNA 0.41 9 28814118 28821841
XM_022675889.1 False 2162 mRNA 0.41 8 28815243 28821841
XM_022675891.1 False 1526 mRNA 0.43 7 28814118 28819528
XM_022675892.1 False 1518 mRNA 0.44 8 28814118 28820601

Neighbor

gene id symbol gene type direction distance location
abat abat,LOC107690246,LOC107738621,LOC107685926 coding upstream 65134 28697422 ~ 28748984 (+)
mettl22 mettl22 coding upstream 119190 28665212 ~ 28694928 (+)
fbxl16 fbxl16,LOC107685932,LOC107738613,LOC107568165,LOC107568127,LOC107690242 coding upstream 972062 27799416 ~ 27842056 (+)
LOC103031039 gsg1l,LOC103031039,LOC108436662,LOC107690243,LOC107738642,LOC107685933 coding upstream 1065932 27703214 ~ 27748186 (+)
c2h16orf89 cunh16orf89 coding upstream 1210975 27591585 ~ 27603143 (+)
LOC103022852 arhgdib,gdir2,LOC108432841,LOC107590585,LOC107685923,LOC107568023,LOC106601960 coding downstream 6761 28828602 ~ 28890929 (+)
LOC103022544 pde6g,LOC108432842,LOC107733865,LOC107690252 coding downstream 79182 28901023 ~ 28902504 (+)
LOC103024010 LOC106597007 coding downstream 129630 28951471 ~ 28963823 (+)
c2h16orf72 cunh16orf72,c2h16orf72,zgc:66160,LOC103025273,LOC105900007,LOC107590581,LOC107738628,LOC107685917 coding downstream 179070 29000911 ~ 29008385 (+)
atf7ip2 atf7ip2 coding downstream 772055 29593896 ~ 29610385 (+)
G14346 NA non-coding upstream 11701 28707296 ~ 28802417 (+)
G14353 NA non-coding upstream 89412 28723392 ~ 28724706 (+)
G14352 NA non-coding upstream 114904 28698264 ~ 28699214 (+)
G14348 NA non-coding upstream 128368 28685296 ~ 28685750 (+)
G14338 NA non-coding upstream 192998 28620714 ~ 28621120 (+)
G14365 NA non-coding downstream 70065 28891906 ~ 28892162 (+)
G14364 NA non-coding downstream 82014 28903855 ~ 28924253 (+)
G14369 clcn7 non-coding downstream 103943 28925784 ~ 28927653 (+)
G14377 NA non-coding downstream 130810 28952651 ~ 29011035 (+)
G14363 NA non-coding downstream 143378 28965219 ~ 28966857 (+)
rbfox1 rbfox1 other upstream 207029 28112046 ~ 28607089 (+)
LOC103031366 LOC105899914 other upstream 736300 28050129 ~ 28077818 (+)
G14047 NA other upstream 1773589 27009548 ~ 27040529 (+)
LOC103023549 gpr171 other upstream 3019034 25788584 ~ 25795084 (+)
mfrp mfrp other upstream 3140882 25660898 ~ 25673236 (+)
G14444 NA other downstream 307226 29129067 ~ 29129373 (+)
G14480 NA other downstream 573319 29395160 ~ 29398166 (+)
nubp1 nubp1,LOC107690260,LOC107685912 other downstream 852269 29674110 ~ 29720592 (+)
G14505 NA other downstream 911464 29733305 ~ 29742723 (+)
G14638 rps15a,MGC114789,RPS15A,LOC107686992 other downstream 1438836 30260677 ~ 30268382 (+)

Expression


Co-expression Network