LOC103022852 (arhgdib,gdir2,LOC108432841,LOC107590585,LOC107685923,LOC107568023,LOC106601960)


Basic Information

Item Value
gene id LOC103022852
gene name arhgdib,gdir2,LOC108432841,LOC107590585,LOC107685923,LOC107568023,LOC106601960
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 28828602 ~ 28890929 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007245551.3
TCGATAGCGTTCGTCTGCAGGGAGGAGGGCAAGCGGCGGTCCTGCACGGATTACAGCCACATCGTTCCTGCatttatactctctctctctctttctctctctctctctttctctcactcactcactctcactgttCCCCACCCAAATCCTGGGATTTCTCTGCTTTCCTCTGCTTTCCTGCTGCTCTGAAGGATGCTGATCTGATTGCTTCCCGTTTCCAGGCAGTTATTCACGTTTCTAGTCACTTTTTTCCTCAATTGGACTCTCTATAAGATTTCTCTTTGggaattttttttggggggaaagaCCTCCGGAGAGCGATGCTGGGCTTGGATGTGTGCGAGTTTGGCGGGCAGCTTCTGGAGCTGCTTTGGCTGACAGTTTGCTACAGAGGAATAATGGCGGATAAAGAGAGCACAGTTCCTGTGggtgaggaggaggatgaaACTGATTTGAACTATCAGCCTCCTGCTCAGAAAAGCCTGCAGGAGATCCAGGAGCTGGACAAGGATGACGAAAGCCTCAACAAGTACAAGCAGACCCTGCTGGGCTCCGGACCTGTGGTGTCAGatCCGACCATTCCTAACGTTCAGGTGACGAGGCTGACGCTGATGTGTGACCAGGCCCCCGGACCTATCACCATGGACTTAACAGGTGACCTTGATGCTTTGAAGAAACAGAACTTCGTCATGAAGGAGGGCGTGGATTACAGGGTGAAGATCCACTTTAAGGTCAACAGGGACATCGTGTCTGGGCTGAAGTACGTGCACTTGACCTACAGGAAAGGACTGCGAGTGGATAAAGCCGTGTACATGGTGGGCAGCTACGGGCCGAGGGTGGAGGAGCACGAGTTCCTCACCCCGGTGGAGGAGGCGCCCAAGGGCATGATCGTCCGAGGAACCTACCACATCAAGTCCTACTTCACAGACGACGACAAGACGGACCACCTGTCCTGGGAGTGGAACCTGCAGATCAAGAAGGACTGGACCAGCGCGGAGTAAACGGCGCCCTCTCTCTGCCCGCATGCGCCTGCGCAGCCGCGCGGGGCCTGACTGCATGTAGGAAGGGTGCACGGAGAGGGGTTTAGGCTGGGCTTAGCTGCGGATCAGGGTGGGGTTCACAGATGTATCTTTTGTTACTATAGGAGGGTGGAGATGAGGCTAATAGAAGCACTATTGGAGCTAAACATCAgactaaaaaagacaaaaatattggctacagattcatactgggttTAAAATCACAGATCCTATTGGTAAagatttaaagtaaatatagtatatCATACTAATCCAGCTCCAataatgctataaaaaaaaaactatattgttAGGTCTTAAGGGATGGTAGGGAAATACGCATATACAGCGACTCGCAGGGTAATTAGAGGACATTCATTCCTAAAGAGAACATGTTATCAGTTGTATAAAAGACAGATCAATTTCCTGGCGCCTGTGCTCTCAGGTTAGTTCGTGTTTTGaactgtaaatgtatgtattaagACGTCCGTATTCTTTGCATTTAAGGTCCGTTCCGGAGCTCCAGAGCAGAACGGTGCATGCTTGAGTGTGAAATGATTGTGCAGTGGCTGTCCTTCTGTAATCAGACCGTTGTAAATTCCCGTGGGTCAcctgcccttttttttttttttgccacatcTGTAATGTACAAACGATTATCAtcaacataaaattaaaattaggaACAATATTAAGAAAAAACTCAATACAAACTTATAGTAGGAGCCAATGGAAAGCTGCCTCAGCTTCTCCGCATTTGCATCTATTATAGATATAGATCAGTTTATTTTTGGACTTTTACTAAGTACAGTCAGT
>XM_007245552.3
CCAGTATGAATGCGGGTGGGAAAGTTAAAACAAGTTAGACCATTTGCTTTACTGATACACAGACCCACAGCAACAGGTCAGAACAAGACTGCAGAGGAATAATGGCGGATAAAGAGAGCACAGTTCCTGTGggtgaggaggaggatgaaACTGATTTGAACTATCAGCCTCCTGCTCAGAAAAGCCTGCAGGAGATCCAGGAGCTGGACAAGGATGACGAAAGCCTCAACAAGTACAAGCAGACCCTGCTGGGCTCCGGACCTGTGGTGTCAGatCCGACCATTCCTAACGTTCAGGTGACGAGGCTGACGCTGATGTGTGACCAGGCCCCCGGACCTATCACCATGGACTTAACAGGTGACCTTGATGCTTTGAAGAAACAGAACTTCGTCATGAAGGAGGGCGTGGATTACAGGGTGAAGATCCACTTTAAGGTCAACAGGGACATCGTGTCTGGGCTGAAGTACGTGCACTTGACCTACAGGAAAGGACTGCGAGTGGATAAAGCCGTGTACATGGTGGGCAGCTACGGGCCGAGGGTGGAGGAGCACGAGTTCCTCACCCCGGTGGAGGAGGCGCCCAAGGGCATGATCGTCCGAGGAACCTACCACATCAAGTCCTACTTCACAGACGACGACAAGACGGACCACCTGTCCTGGGAGTGGAACCTGCAGATCAAGAAGGACTGGACCAGCGCGGAGTAAACGGCGCCCTCTCTCTGCCCGCATGCGCCTGCGCAGCCGCGCGGGGCCTGACTGCATGTAGGAAGGGTGCACGGAGAGGGGTTTAGGCTGGGCTTAGCTGCGGATCAGGGTGGGGTTCACAGATGTATCTTTTGTTACTATAGGAGGGTGGAGATGAGGCTAATAGAAGCACTATTGGAGCTAAACATCAgactaaaaaagacaaaaatattggctacagattcatactgggttTAAAATCACAGATCCTATTGGTAAagatttaaagtaaatatagtatatCATACTAATCCAGCTCCAataatgctataaaaaaaaaactatattgttAGGTCTTAAGGGATGGTAGGGAAATACGCATATACAGCGACTCGCAGGGTAATTAGAGGACATTCATTCCTAAAGAGAACATGTTATCAGTTGTATAAAAGACAGATCAATTTCCTGGCGCCTGTGCTCTCAGGTTAGTTCGTGTTTTGaactgtaaatgtatgtattaagACGTCCGTATTCTTTGCATTTAAGGTCCGTTCCGGAGCTCCAGAGCAGAACGGTGCATGCTTGAGTGTGAAATGATTGTGCAGTGGCTGTCCTTCTGTAATCAGACCGTTGTAAATTCCCGTGGGTCAcctgcccttttttttttttttgccacatcTGTAATGTACAAACGATTATCAtcaacataaaattaaaattaggaACAATATTAAGAAAAAACTCAATACAAACTTATAGTAGGAGCCAATGGAAAGCTGCCTCAGCTTCTCCGCATTTGCATCTATTATAGATATAGATCAGTTTATTTTTGGACTTTTACTAAGTACAGTCAGT

Function

symbol description
arhgdib Enables GTPase activity; Rho GDP-dissociation inhibitor activity; and small GTPase binding activity. Involved in negative regulation of trophoblast cell migration; regulation of Rho protein signal transduction; and regulation of actin cytoskeleton reorganization. Located in cytosol.

NR:

description
rho GDP-dissociation inhibitor 2 isoform X1

GO:

id name namespace
GO:0050790 regulation of catalytic activity biological_process
GO:0005737 cytoplasm cellular_component
GO:0005094 Rho GDP-dissociation inhibitor activity molecular_function

KEGG:

id description
K12462 ARHGDI, RHOGDI; Rho GDP-dissociation inhibitor

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007245551.3 True 1835 mRNA 0.47 6 28841277 28890929
XM_007245552.3 False 1538 mRNA 0.47 6 28828602 28890929

Neighbor

gene id symbol gene type direction distance location
dnase1 dnase1l2 coding upstream 6761 28814118 ~ 28821841 (+)
abat abat,LOC107690246,LOC107738621,LOC107685926 coding upstream 79618 28697422 ~ 28748984 (+)
mettl22 mettl22 coding upstream 133674 28665212 ~ 28694928 (+)
fbxl16 fbxl16,LOC107685932,LOC107738613,LOC107568165,LOC107568127,LOC107690242 coding upstream 986546 27799416 ~ 27842056 (+)
LOC103031039 gsg1l,LOC103031039,LOC108436662,LOC107690243,LOC107738642,LOC107685933 coding upstream 1080416 27703214 ~ 27748186 (+)
LOC103022544 pde6g,LOC108432842,LOC107733865,LOC107690252 coding downstream 10094 28901023 ~ 28902504 (+)
LOC103024010 LOC106597007 coding downstream 60542 28951471 ~ 28963823 (+)
c2h16orf72 cunh16orf72,c2h16orf72,zgc:66160,LOC103025273,LOC105900007,LOC107590581,LOC107738628,LOC107685917 coding downstream 109982 29000911 ~ 29008385 (+)
atf7ip2 atf7ip2 coding downstream 702967 29593896 ~ 29610385 (+)
ciita NA coding downstream 835384 29726313 ~ 29757199 (+)
G14346 NA non-coding upstream 26185 28707296 ~ 28802417 (+)
G14353 NA non-coding upstream 103896 28723392 ~ 28724706 (+)
G14352 NA non-coding upstream 129388 28698264 ~ 28699214 (+)
G14348 NA non-coding upstream 142852 28685296 ~ 28685750 (+)
G14338 NA non-coding upstream 207482 28620714 ~ 28621120 (+)
G14365 NA non-coding downstream 977 28891906 ~ 28892162 (+)
G14364 NA non-coding downstream 12926 28903855 ~ 28924253 (+)
G14369 clcn7 non-coding downstream 34855 28925784 ~ 28927653 (+)
G14377 NA non-coding downstream 61722 28952651 ~ 29011035 (+)
G14363 NA non-coding downstream 74290 28965219 ~ 28966857 (+)
rbfox1 rbfox1 other upstream 221513 28112046 ~ 28607089 (+)
LOC103031366 LOC105899914 other upstream 750784 28050129 ~ 28077818 (+)
G14047 NA other upstream 1788073 27009548 ~ 27040529 (+)
LOC103023549 gpr171 other upstream 3033518 25788584 ~ 25795084 (+)
mfrp mfrp other upstream 3155366 25660898 ~ 25673236 (+)
G14444 NA other downstream 238138 29129067 ~ 29129373 (+)
G14480 NA other downstream 504231 29395160 ~ 29398166 (+)
nubp1 nubp1,LOC107690260,LOC107685912 other downstream 783181 29674110 ~ 29720592 (+)
G14505 NA other downstream 842376 29733305 ~ 29742723 (+)
G14638 rps15a,MGC114789,RPS15A,LOC107686992 other downstream 1369748 30260677 ~ 30268382 (+)

Expression


Co-expression Network