fbxl16 (fbxl16,LOC107685932,LOC107738613,LOC107568165,LOC107568127,LOC107690242)


Basic Information

Item Value
gene id fbxl16
gene name fbxl16,LOC107685932,LOC107738613,LOC107568165,LOC107568127,LOC107690242
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 27799416 ~ 27842056 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022675820.1
agagagagagagagagaggcagtgagCTTTGTGTGGAGGAGCAGCATGAACAGACATTATCCGTTATTTCTAGCGCGCGctacgctgctgctgctgctgtagctccGGTCGACCCCTTGCATGGAGTGAACGGGTGGACTCGGTTCTCGCGCGCGGATCCAGCGAGTCCGTCGCACCTCTATGGCAACATCTATCCTCCTCCCCTCCGGTACCGAGACACGACGGGCAGGGCTGCTGCTGCGGAGCTCGCGTGCCTCCCCCGTTTTTCCCGCTTTTCCCCGCGTTGTGGGAAACGTGCTCGAGGCAGGTCTGCAGGATCCCAGCATGGATTAACGCTCGCGCGCGGACTGCACGGCCAGGCTCTGAAAGCTGAACATGTCCACTCCAAGTGACCTCAAGTCTCCCTGTGTAACACGGAACGGCATGGTCAAGTTGCCCCCCCAACCCAACGGCCTCGGTTCGGCCAGCATCACGAAAGGCACTCCGGCCGCAAAGAACCGCCTGTGCCAGTCGTCTTCGGTTCCCACCATCTTACCCCCACCCAGCCTTCCCTACCACCTCGAACCCCTGCCCACGGCAGCCTCCCTGCTGGGCCCGGACCTGGACACTAGCCCCCTGATGGCCATCAAGCCCCCGCTCAGGCAATACCCCAAACCCCTGCTGGAGCGGCAGCTGGTGCTGGACGAGAAGGTGCTCAATCGGCTGCTGTGGTACTTCACCACTGCCGAAAAGTGTATCCTCGCACAAGTGTGCAAGACATGGCGCAAGGTGCTGTACCAGCCCAAGTTCTGGGAAGGTGTGACGCCCATTCTGCACGCTAAGGAGCTCTACAACGTCCTCCCCAATGGAGAGAAGGAGTTCATCAGCCTGCAGGCCTTCGCCCTCAGGGGCTTCCAGTCCTTCTGCCTGGTGGGCGTCTCCGACTTGGACATTTGTGAGTTCATCGACAACTACCCGCTGTCAAAGAAGGGCGTCAAATCCGTCAGTCTAAAGAGGTCAACCATCACGGATGCAGGACTTGAGGTGATGCTGGAGCAGATGCAGGGCCTGATGCACCTGGAGCTGTCCGGCTGCAACGACTTCACGGAGGCCGGCCTGTGGTCGAGCCTGAACGCACGCCTCACCTCACTCAGCGTCAGCGACTGCATCAACGTGGCGGACGATGCCATCGCCGCCATCTCGCAGCTCCTGCCCAACCTGTCCGAACTCAGCCTGCAGGCCTACCACGTGACGGACACAGCCATGGCCTACTTTACGGCCAAGCAGGGCTACACCACCCACACGCTGCGGCTGCACTCCTGCTGGGAGATCACCAACCACGGCGTGGTGAACATGGTGCACAGCCTGCCCAACCTGACCGCCCTCAGCCTGTCGGGCTGCTCCAAAATCACGGACGACGGCGTGGAGCTGGTGGCCGAGAACCTGAGGAAACTGCGCAGCCTGGACCTGTCCTGGTGCCCGCGGATCACCGACATGGCCCTGGAGTACATCGCCTGCGACCTGCACAAACTGGAGGAGCTGGTGCTAGATCGGTGTGTACGGATCACAGACACAGGCCTCGGGTATCTCTCCACCATGTCCTCACTGCGGAGTCTATATCTACGCTGGTGCTGTCAGGTGCAGGACTTTGGCTTACAGCACCTGTTCGGCATGAGGAGCCTGCGTCTCCTCTCTCTGGCAGGCTGCCCCCTGCTGACCACCACTGGCCTTTCAGGCCTGATCCagctgcaggagctggaggagctggagctgacCAACTGCCCGGGCGCCACGGCCGAACTGTTCAAGTACTACTCCCAGCACCTGCCGCGCTGCATGGTCATCGAGTAGGCGGCGCCCGCCGGAACCTTCATCATCACCAGAACCTTGTCCTTCAGACGAACGAATGAACGAACGAATGAAAGAGCGAAATAAAAACAGACTGATGATTTAATCCCACTTCATCCTGAACCCAGCGAGGGGGAGCGAAATGAAATGAAACGAAACGAATGCAAAAAACAAACGGATGCTAAAGGAAAGCAAGTCTTCGACGAAGCAGCAGAGGAGGTTGAGCTAGAAGGGGAGGAGCTTAAAGAGCTTAAGGAGGAGAATGTGAGCGGAGAACAGGCCTCGACTGATGCGGAAGGGAAACGAAAGGGGGGTTAGAGGGTAGAGGGGGTCCGAGAGAGGCTAGAACCTTTCATTCAACGACATGACACTCGTTCAGCCATCGATCAGccttcacacacacatgtacacacgtGATACACACCTGAAACATTAAGGAAACTCCAACAGAACTGAGGCCGAACTGCGAAACGGCCCAAACGTCCCGTATTTCCTCCTGTAATGGTTTCTTGTCTTTTTCTTGAATTGACAAACGAGCGTCGCCGCCTCTCTGCGTGAGCTGGCTCTCTGAACTTTGGGAGAGGGAGCACGAGAGCACAGGAAGAGGACCTGGGAAAGAAAACAGCTACTGAAACAATACCTTACGATACCTTACGATacgatacaatacaatacagggTTTCTTTGCTATTGTACAGCAGCGTCCTTATCCACACTGGTTTCAGCGCAGTGGCCTGTCTACGTCTCTATATCAAGAAAACAGCggaaaaaacgaataaaaaaactaaacaaacaaaggagacaaacagacacataaAGCAAATCTATTAGGAGACGAACAGCCGTGTAGAGTTTCGAGTTTCGCATCAAAGCTGCACGCCTACTCGCTTATTGTCATGCGGTTTCTTCTCGTTTTTCCTTTtggaaatcttatttttttaagtattttttgatgatgatgatgacgatgatgataatgatgatggtggtgatgatgatgatgatattgaTGATGATATTGATGATGAGGATTACTGTGAATTTTTTGGTGAGTGACCAAGGTTTCAGGACTTTGAATAAAACAGGCATCCAGGTACGACGAAAGCACGATA

Function

symbol description
fbxl16 Predicted to be involved in SCF-dependent proteasomal ubiquitin-dependent protein catabolic process. Predicted to be part of SCF ubiquitin ligase complex. Orthologous to human FBXL16 (F-box and leucine rich repeat protein 16).

NR:

description
PREDICTED: F-box/LRR-repeat protein 16

GO: NA

KEGG:

id description
K10282 FBXL16; F-box and leucine-rich repeat protein 16

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022675820.1 True 2939 mRNA 0.55 6 27799416 27842056

Neighbor

gene id symbol gene type direction distance location
LOC103031039 gsg1l,LOC103031039,LOC108436662,LOC107690243,LOC107738642,LOC107685933 coding upstream 51230 27703214 ~ 27748186 (+)
c2h16orf89 cunh16orf89 coding upstream 196273 27591585 ~ 27603143 (+)
eef2kmt eef2kmt coding upstream 221356 27573552 ~ 27578060 (+)
LOC111194302 NA coding upstream 687348 27104032 ~ 27112068 (+)
LOC107197223 NA coding upstream 695562 27060145 ~ 27103854 (+)
mettl22 mettl22 coding downstream 823156 28665212 ~ 28694928 (+)
abat abat,LOC107690246,LOC107738621,LOC107685926 coding downstream 855366 28697422 ~ 28748984 (+)
dnase1 dnase1l2 coding downstream 972062 28814118 ~ 28821841 (+)
LOC103022852 arhgdib,gdir2,LOC108432841,LOC107590585,LOC107685923,LOC107568023,LOC106601960 coding downstream 986546 28828602 ~ 28890929 (+)
LOC103022544 pde6g,LOC108432842,LOC107733865,LOC107690252 coding downstream 1058967 28901023 ~ 28902504 (+)
G14172 NA non-coding upstream 119724 27679425 ~ 27679692 (+)
G14096 NA non-coding upstream 156294 27586935 ~ 27643122 (+)
G14089 NA non-coding upstream 179602 27566514 ~ 27619814 (+)
G14084 NA non-coding upstream 205979 27505915 ~ 27593437 (+)
G14080 NA non-coding upstream 354094 27445011 ~ 27445322 (+)
G14198 NA non-coding downstream 162228 28004284 ~ 28094960 (+)
G14217 NA non-coding downstream 359105 28201161 ~ 28206645 (+)
G14245 NA non-coding downstream 637735 28479791 ~ 28480303 (+)
G14247 NA non-coding downstream 658423 28500479 ~ 28502147 (+)
G14338 NA non-coding downstream 778658 28620714 ~ 28621120 (+)
G14047 NA other upstream 758887 27009548 ~ 27040529 (+)
LOC103023549 gpr171 other upstream 2004332 25788584 ~ 25795084 (+)
mfrp mfrp other upstream 2126180 25660898 ~ 25673236 (+)
LOC103045399 LOC108426937,LOC108277812 other upstream 2156673 25561633 ~ 25642743 (+)
LOC103040166 LOC103040166,LOC108426893 other upstream 2459981 25246996 ~ 25339435 (+)
LOC103031366 LOC105899914 other downstream 208073 28050129 ~ 28077818 (+)
rbfox1 rbfox1 other downstream 269990 28112046 ~ 28607089 (+)
G14444 NA other downstream 1287011 29129067 ~ 29129373 (+)
G14480 NA other downstream 1553104 29395160 ~ 29398166 (+)
nubp1 nubp1,LOC107690260,LOC107685912 other downstream 1832054 29674110 ~ 29720592 (+)

Expression


Co-expression Network