LOC103022544 (pde6g,LOC108432842,LOC107733865,LOC107690252)


Basic Information

Item Value
gene id LOC103022544
gene name pde6g,LOC108432842,LOC107733865,LOC107690252
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 28901023 ~ 28902504 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007245550.3
AGACTGGAAAGAGATGTCATCAACCAGTAGCAGTTCCAGTAGCAGTTCCAGTAGCAGTAGCATTGGTGTCAGTGATGTGTCCAGCTGCCCAACTCGAGCCATCAATGGACCCACCACACCCAGGAAAGGACCACCAAAGTTCAAACAGAGGATGACCAGACACTTCAAGAGCAAACCGCCCAAGAAGGGAGTGAAAGGattTGGAGATGAAATCCCTGGAATGGAGGGACTGGGGAATGATTACACCGTGGTGTGCCCCTGGGAAGCCTTCAGCCACCTGGAGCTCCACGAGCTGGCCCAGTACGGCATCATCTGACCCAGCGGCCTGAGCCAATTAATCTAACCCATTCACCCGGACTCCTTACTGTAGATCTGACTCAGTGCCAGCGCCTGACCCACAATCCTCCAGCTGAGACTCTCTTCTGACCAGTGTACCAACCAGAAAAGCCTGGGGGAAGATCTCACAGCCTTAAGTACTTCTGTAGGTACAGGAACAAAGGAACAAAAGACATTAGTACAAAGCCAATATTCTGTAAACCTCTAAATGCATTTGGTCTATtttgagccaaaacattaactaataatttattgaatattgttataataatgattttattcattttacttaGTTTGGTAGTTCATTAGAGTGGAATTGCACACGTTTTTCACCAGATTTACCAAAATGTCTATTGTTTCTTTCAGTGGTTACGAGCTGTGTGATGAGACATTCTATTGCGTTCACAAGAACAATTTtaccaatatattttt

Function

symbol description
pde6g Predicted to enable enzyme inhibitor activity. Predicted to be involved in positive regulation of G protein-coupled receptor signaling pathway and positive regulation of epidermal growth factor receptor signaling pathway. Predicted to act upstream of or within positive regulation of MAPK cascade. Predicted to be located in photoreceptor disc membrane and plasma membrane. Predicted to be active in photoreceptor outer segment membrane. Implicated in retinitis pigmentosa 57.

NR:

description
PREDICTED: retinal cone rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit gamma-like

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0007601 visual perception biological_process
GO:0030553 cGMP binding molecular_function
GO:0004114 3',5'-cyclic-nucleotide phosphodiesterase activity molecular_function

KEGG:

id description
K13760 PDE6H; retinal cone rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit gamma

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007245550.3 True 768 mRNA 0.44 3 28901023 28902504

Neighbor

gene id symbol gene type direction distance location
LOC103022852 arhgdib,gdir2,LOC108432841,LOC107590585,LOC107685923,LOC107568023,LOC106601960 coding upstream 10094 28828602 ~ 28890929 (+)
dnase1 dnase1l2 coding upstream 79182 28814118 ~ 28821841 (+)
abat abat,LOC107690246,LOC107738621,LOC107685926 coding upstream 152039 28697422 ~ 28748984 (+)
mettl22 mettl22 coding upstream 206095 28665212 ~ 28694928 (+)
fbxl16 fbxl16,LOC107685932,LOC107738613,LOC107568165,LOC107568127,LOC107690242 coding upstream 1058967 27799416 ~ 27842056 (+)
LOC103024010 LOC106597007 coding downstream 48967 28951471 ~ 28963823 (+)
c2h16orf72 cunh16orf72,c2h16orf72,zgc:66160,LOC103025273,LOC105900007,LOC107590581,LOC107738628,LOC107685917 coding downstream 98407 29000911 ~ 29008385 (+)
atf7ip2 atf7ip2 coding downstream 691392 29593896 ~ 29610385 (+)
ciita NA coding downstream 823809 29726313 ~ 29757199 (+)
clec16a clec16a coding downstream 859474 29761978 ~ 29864484 (+)
G14365 NA non-coding upstream 8861 28891906 ~ 28892162 (+)
G14346 NA non-coding upstream 98606 28707296 ~ 28802417 (+)
G14353 NA non-coding upstream 176317 28723392 ~ 28724706 (+)
G14352 NA non-coding upstream 201809 28698264 ~ 28699214 (+)
G14348 NA non-coding upstream 215273 28685296 ~ 28685750 (+)
G14364 NA non-coding downstream 1351 28903855 ~ 28924253 (+)
G14369 clcn7 non-coding downstream 23280 28925784 ~ 28927653 (+)
G14377 NA non-coding downstream 50147 28952651 ~ 29011035 (+)
G14363 NA non-coding downstream 62715 28965219 ~ 28966857 (+)
G14429 NA non-coding downstream 162015 29064519 ~ 29064738 (+)
rbfox1 rbfox1 other upstream 293934 28112046 ~ 28607089 (+)
LOC103031366 LOC105899914 other upstream 823205 28050129 ~ 28077818 (+)
G14047 NA other upstream 1860494 27009548 ~ 27040529 (+)
LOC103023549 gpr171 other upstream 3105939 25788584 ~ 25795084 (+)
mfrp mfrp other upstream 3227787 25660898 ~ 25673236 (+)
G14444 NA other downstream 226563 29129067 ~ 29129373 (+)
G14480 NA other downstream 492656 29395160 ~ 29398166 (+)
nubp1 nubp1,LOC107690260,LOC107685912 other downstream 771606 29674110 ~ 29720592 (+)
G14505 NA other downstream 830801 29733305 ~ 29742723 (+)
G14638 rps15a,MGC114789,RPS15A,LOC107686992 other downstream 1358173 30260677 ~ 30268382 (+)

Expression


Co-expression Network