G14363


Basic Information

Item Value
gene id G14363
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 28965219 ~ 28966857 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU19265
TTTCAGCAAAAAGGCAATATACAGGAATAGTTGTCGTACACTGCTGCTACACGGAGGAATTagagtggaacaaaaaaaacaaaaaaaaaatcaaattaaaatatgtgaTTTGCAGGTCATTCTGTACTGCACTTAAACAAGACAAACTGTTGCAAGTAGTTAAGGGAGGAGGAAAGGGcgggagaagaaaaaaaaagggtaaaGACCAAATAAAACGGAAAGTCAGCGTCCaaaataaaactacacacaAGGAATATGAACATCTGAATTGATCTGTACCCAACAAAGCGTGTCTTTAATTTTACATGTCCATTCtttaaatatacaattttaaatgtTGTCTTTACAAAGCCAACTACGCACTAGGGAGCACCCCCTGCTGTgcttacaaaaaagaaaaaaaaggaaaaaaaggagaaaCCCCAAGGATTTGTATTGGTTCATTTAATGCTGGTTTCTCTAAGTTCTGAACCAGTCTACCAAATGTCTGCAGCCTCCTGCCAAAGCCCGAAGCACAGTACAGAGAACACGGAGCCTTCAGTAAGCCGCCCCACCCGCCAAACTTCAGAACAATCCCACGGCAAAGCGACTGAGGAGCGCAGGAGGGGGACAGAGGATGTGAGGGGAGGGGCCAGGGGCCAAATAACAACCAAAGATTACATTTTCCAGTGCTGAGAAATGTAAAACCTTTGATATTTAAGTGCCAACGTGCAAGATGAAGTACAGACAATTTTATATCAGTTCTggttgcattatttatttatttattttttttaatctaaaaggATGCTGTGGATTTTTGATTTTTCATTTATCATACAAGAGATTTTCCAGAAAAAGACAAACTGAACCTCCTCCAATTGAACTAAGTGAGAAAGAACTGTGTAAACATGAAAAATTGCCTAGTTGCACTAAAGGACGAGAAAAAAATGAACCACTTCAGGGCAACTAGCAAGCTATAAGCCATCtgagttgtttttgttttttattgttttttttttctgtttttttgaaaagaaaaatcctttcattttacttaacttacttGCAAATGGCATAAACTTGTCATCCTTACCCCTCGCTTCGCAGCAGCTTTCTTGACGGaacaattaattcatttaaaaacgaaattaaaaaggaaaaaaaagaaacaaaaacgaaacaaaaaaaaacctgtctAGAAGTTCATACTGATCCCCTCCTTTCGTTAAAATCCAATTAGTTCTTCCAGACGAAATAGGCAGTTGATAGTGAAGCCAAATcggagaggaaaaaaagggaaggggaaagaaaaaaaaaaaaaagaaaagaaaaggaaaaacccATGAGCGCAACTCCGTTTTGCTGAAGACTTCATACATTGGGCCTGTGTGCCCAGACAGCAGGTGGTAAAAGTGGTGCACACAAGACAGTTTGGTTAAAGTCTTTAGTAGGGTCGGTTAAGGTGGGGAGAGCTTGTCAGTTGTGAATCTTAATCGCCTTCTCCAGGTACGTGTAGCGCCCTCTCTTTGGAGCCTTGTTGAAGTGATCGAGACCTAACCAAGGCCTCGGGTGGGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU19265 True 1557 lncRNA 0.57 2 28965219 28966857

Neighbor

gene id symbol gene type direction distance location
LOC103024010 LOC106597007 coding upstream 1396 28951471 ~ 28963823 (+)
LOC103022544 pde6g,LOC108432842,LOC107733865,LOC107690252 coding upstream 62715 28901023 ~ 28902504 (+)
LOC103022852 arhgdib,gdir2,LOC108432841,LOC107590585,LOC107685923,LOC107568023,LOC106601960 coding upstream 74290 28828602 ~ 28890929 (+)
dnase1 dnase1l2 coding upstream 143378 28814118 ~ 28821841 (+)
abat abat,LOC107690246,LOC107738621,LOC107685926 coding upstream 216235 28697422 ~ 28748984 (+)
c2h16orf72 cunh16orf72,c2h16orf72,zgc:66160,LOC103025273,LOC105900007,LOC107590581,LOC107738628,LOC107685917 coding downstream 34054 29000911 ~ 29008385 (+)
atf7ip2 atf7ip2 coding downstream 627039 29593896 ~ 29610385 (+)
ciita NA coding downstream 759456 29726313 ~ 29757199 (+)
clec16a clec16a coding downstream 795121 29761978 ~ 29864484 (+)
pigq pigq,LOC107690265,LOC107733876,LOC107590576 coding downstream 928695 29895552 ~ 29907786 (+)
G14369 clcn7 non-coding upstream 37566 28925784 ~ 28927653 (+)
G14364 NA non-coding upstream 40966 28903855 ~ 28924253 (+)
G14365 NA non-coding upstream 73057 28891906 ~ 28892162 (+)
G14346 NA non-coding upstream 162802 28707296 ~ 28802417 (+)
G14429 NA non-coding downstream 97662 29064519 ~ 29064738 (+)
G14443 NA non-coding downstream 160609 29127466 ~ 29127678 (+)
G14459 NA non-coding downstream 293161 29260018 ~ 29260219 (+)
G14462 NA non-coding downstream 307558 29274415 ~ 29274761 (+)
G14463 NA non-coding downstream 308104 29274961 ~ 29275432 (+)
rbfox1 rbfox1 other upstream 358130 28112046 ~ 28607089 (+)
LOC103031366 LOC105899914 other upstream 887401 28050129 ~ 28077818 (+)
G14047 NA other upstream 1924690 27009548 ~ 27040529 (+)
LOC103023549 gpr171 other upstream 3170135 25788584 ~ 25795084 (+)
mfrp mfrp other upstream 3291983 25660898 ~ 25673236 (+)
G14444 NA other downstream 162210 29129067 ~ 29129373 (+)
G14480 NA other downstream 428303 29395160 ~ 29398166 (+)
nubp1 nubp1,LOC107690260,LOC107685912 other downstream 707253 29674110 ~ 29720592 (+)
G14505 NA other downstream 766448 29733305 ~ 29742723 (+)
G14638 rps15a,MGC114789,RPS15A,LOC107686992 other downstream 1293820 30260677 ~ 30268382 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G275173 NA non-coding CI01000069 null 916484 ~ 952244 (-)
eurasian perch (Perca fluviatilis) G189114 htr1e,htr1b,LOC103130375,LOC106909287,LOC103457078 non-coding NC_053129.1 CM020926.1 32965274 ~ 32965502 (+)