G14365


Basic Information

Item Value
gene id G14365
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 28891906 ~ 28892162 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU19267
taaaaactgcatgttcttttttttacaggctTCTCATAGTTTTTCATTGTGATGTGTCAGTCATGACGGCAGGGGCAGTTAGAGTCATACACAGCTTGTGATTTATTGGCTAAAATATCATAGTCAAagatatactgtacatcttttcatgcatcttgcattttttaaataaagtcaatCAATAAAGCTTGTCTTAATCCACCTCAGGAGCTGTGTTTGTTCATACAGTAATTGCTGTCACATGATTTAATAAGAGA

Function

NR:

description
unnamed protein product, partial

GO:

id name namespace
GO:0016064 immunoglobulin mediated immune response biological_process
GO:0002250 adaptive immune response biological_process
GO:0072376 protein activation cascade biological_process
GO:0006956 complement activation biological_process
GO:0006958 complement activation, classical pathway biological_process
GO:0006959 humoral immune response biological_process
GO:0002455 humoral immune response mediated by circulating immunoglobulin biological_process
GO:0002460 adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains biological_process
GO:0019724 B cell mediated immunity biological_process

KEGG:

id description
ko04664 Fc epsilon RI signaling pathway
ko04670 Leukocyte transendothelial migration

RNA

RNA id representative length rna type GC content exon number start site end site
TU19267 True 257 lncRNA 0.54 1 28891906 28892162

Neighbor

gene id symbol gene type direction distance location
LOC103022852 arhgdib,gdir2,LOC108432841,LOC107590585,LOC107685923,LOC107568023,LOC106601960 coding upstream 977 28828602 ~ 28890929 (+)
dnase1 dnase1l2 coding upstream 70065 28814118 ~ 28821841 (+)
abat abat,LOC107690246,LOC107738621,LOC107685926 coding upstream 142922 28697422 ~ 28748984 (+)
mettl22 mettl22 coding upstream 196978 28665212 ~ 28694928 (+)
fbxl16 fbxl16,LOC107685932,LOC107738613,LOC107568165,LOC107568127,LOC107690242 coding upstream 1049850 27799416 ~ 27842056 (+)
LOC103022544 pde6g,LOC108432842,LOC107733865,LOC107690252 coding downstream 8861 28901023 ~ 28902504 (+)
LOC103024010 LOC106597007 coding downstream 59309 28951471 ~ 28963823 (+)
c2h16orf72 cunh16orf72,c2h16orf72,zgc:66160,LOC103025273,LOC105900007,LOC107590581,LOC107738628,LOC107685917 coding downstream 108749 29000911 ~ 29008385 (+)
atf7ip2 atf7ip2 coding downstream 701734 29593896 ~ 29610385 (+)
ciita NA coding downstream 834151 29726313 ~ 29757199 (+)
G14346 NA non-coding upstream 89489 28707296 ~ 28802417 (+)
G14353 NA non-coding upstream 167200 28723392 ~ 28724706 (+)
G14352 NA non-coding upstream 192692 28698264 ~ 28699214 (+)
G14348 NA non-coding upstream 206156 28685296 ~ 28685750 (+)
G14338 NA non-coding upstream 270786 28620714 ~ 28621120 (+)
G14364 NA non-coding downstream 11693 28903855 ~ 28924253 (+)
G14369 clcn7 non-coding downstream 33622 28925784 ~ 28927653 (+)
G14377 NA non-coding downstream 60489 28952651 ~ 29011035 (+)
G14363 NA non-coding downstream 73057 28965219 ~ 28966857 (+)
G14429 NA non-coding downstream 172357 29064519 ~ 29064738 (+)
rbfox1 rbfox1 other upstream 284817 28112046 ~ 28607089 (+)
LOC103031366 LOC105899914 other upstream 814088 28050129 ~ 28077818 (+)
G14047 NA other upstream 1851377 27009548 ~ 27040529 (+)
LOC103023549 gpr171 other upstream 3096822 25788584 ~ 25795084 (+)
mfrp mfrp other upstream 3218670 25660898 ~ 25673236 (+)
G14444 NA other downstream 236905 29129067 ~ 29129373 (+)
G14480 NA other downstream 502998 29395160 ~ 29398166 (+)
nubp1 nubp1,LOC107690260,LOC107685912 other downstream 781948 29674110 ~ 29720592 (+)
G14505 NA other downstream 841143 29733305 ~ 29742723 (+)
G14638 rps15a,MGC114789,RPS15A,LOC107686992 other downstream 1368515 30260677 ~ 30268382 (+)

Expression


Co-expression Network