LOC103024010 (LOC106597007)


Basic Information

Item Value
gene id LOC103024010
gene name LOC106597007
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 28951471 ~ 28963823 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007245555.3
GAGGAGTTCAGGTGAGGCAGTGAAAAGCTGAGACACCTGTCCTGGACTGGCTTCAGTCACACTGACAACCACTACAACAacaacaccagcagctccagtaCAGTGTGAGCCCTTCTGAACAAAGATGAGTGCTGCAGTGAAGGACCCGCCGCCCTACATCATTCCAATGGAGGGTTCAGGAGACAATGTCAAAGTCTACAAGGTGCACACGCCGTTCAACCCAGCTTCTTCTGAAGACTTACAGATGAGGACCCATTCTTCAGGGGTTCAGGCCACTTCTGCCGACAACGCCAAGAATAAGTATGTGAGCTACGACTCGGAGCTGGGCCGCTCTCCGGGCACCACCACCTGCACCAGCTGCAGGGAACAGGTCCTCACCAACGTCACCTACAAAGTGGGCGCCTTCGCCTGGCTCATGTGCATCCTGTTCATTCTGTGCGGgTTGGTGATCGGCTGCTGTCTGATTCCATTCTTTGTCAAGTACTTTAAAGACGCCTACCACACGTGTCCCAGGTGCAATCGGATTCTCCACGTGGAGAAGAAGCGATGCTGCTGACCCCAGCCGTCCTCCTGAGCCCACTGTTGTACCCACTGCTGCACCATTGCTGCCTCCACTGCTGCACCTCTGCTGCACCACTGCTGCACCATTGCTGTACCCACTGCTGCACCTCTGCTGCACCACTGTTGCACAACTGCTTCCAAACTGTGTTCCAAAAGCTCAGCTCGTGAGAATGCCACGATTGCACACAAATCACCATTTAGTCGCTTGTTGTTGTTGCAAAGGCTAATGGACATTACTGCACCGGTCCTTCTCTACCAgaatgtattaataatgtaattttaccttattttaaattAGAGGTGGGACGAAACTACCCAACTAACAATTTCAGTTAGTAAAACAATTTCTAAATGTTACTATTAATGTCTTTAGAGTGTTCAaacaatttaatgtaaatttgttttaaacatactGGTAATGTAGCTgtaaattctatatatttttttagaatcttacttttaacgttttcataatgttagtattcatctggctgggaatgttatgtaatgttagGGGTTATCCTACCTTTCTTAAACCtttcaaaacattgctaaatgttcttattATGTTCTTTGTTAGCTGGGTAGTTCCATGTACACATTTGAAATGTCTCATATACATAATTggaaaaagtgaaaattaagTGGCcctttaatggtattttttttttgtaataaagcaagattttaacttttaaaaaaaaaaaataataataataattataatgctTAAAAAGACctgtcaaaaaaataaagacaattttAATAGAtgaaatggctttaaaaaaggacattttGAATTTTCCTATAAATGTctgacaacaatgcaaaaattaagacattttagacatttaactaaacttaaatttaaagttaaacTTAAAGTTAAGAGATTTTAACTTGCTAAGATGTTAATTTTTGCAGGGTGTTTTGCAGTTTGGGGACCCAATGCTTTATGTCCAGTGTTTACGAGTTTATCAAGCTTTTCTAATCTTTAGCAGTCTTCACTGGTTCTGGAGAGTCGAGGAAAGGGATCGAGAATATCTGGTTAATGTCGGGGTCATTAATGGTGACCCTGGGAAGAGTTGAACAGAACAGAAAGGGTATTTGACCGAGAAAATAATATTAagctacttttttaaatatatttacctcaCCAAAATAACCTGCCTTACTCCAATTTGTAGCCGTACAGAGCACAGAAGCACCAGGATGGGTCATCATCAGCTAACCGTCACCCAGAAGCACAAATCCAGCCGTTAAAACGTTAGATAAGTCTTGAGGTTATTCTTTTAAAACGTTTTGCTTTGTACATATTAATgctttatctcttttttgtgatttattttgtttgtttttttgtctcattCTGTATCAGTAGTCTATGACACTTAACATGCCAATGTATGAATAGACCAATGATACGGTCGGAATTCATTTATGAATTTCCATTACAATTATATGTTTTCTCCGTATTCTATTGTATCCGATGGGATTTAAAAGCGTCACTGTGCTATTGCCACCACAGAGCCTAATGCATTGAAGGGAATTAAaggttaaagttttattttca

Function

NR:

description
PREDICTED: cell death-inducing p53-target protein 1 homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007245555.3 True 2134 mRNA 0.40 5 28951471 28963823

Neighbor

gene id symbol gene type direction distance location
LOC103022544 pde6g,LOC108432842,LOC107733865,LOC107690252 coding upstream 48967 28901023 ~ 28902504 (+)
LOC103022852 arhgdib,gdir2,LOC108432841,LOC107590585,LOC107685923,LOC107568023,LOC106601960 coding upstream 60542 28828602 ~ 28890929 (+)
dnase1 dnase1l2 coding upstream 129630 28814118 ~ 28821841 (+)
abat abat,LOC107690246,LOC107738621,LOC107685926 coding upstream 202487 28697422 ~ 28748984 (+)
mettl22 mettl22 coding upstream 256543 28665212 ~ 28694928 (+)
c2h16orf72 cunh16orf72,c2h16orf72,zgc:66160,LOC103025273,LOC105900007,LOC107590581,LOC107738628,LOC107685917 coding downstream 37088 29000911 ~ 29008385 (+)
atf7ip2 atf7ip2 coding downstream 630073 29593896 ~ 29610385 (+)
ciita NA coding downstream 762490 29726313 ~ 29757199 (+)
clec16a clec16a coding downstream 798155 29761978 ~ 29864484 (+)
pigq pigq,LOC107690265,LOC107733876,LOC107590576 coding downstream 931729 29895552 ~ 29907786 (+)
G14369 clcn7 non-coding upstream 23818 28925784 ~ 28927653 (+)
G14364 NA non-coding upstream 27218 28903855 ~ 28924253 (+)
G14365 NA non-coding upstream 59309 28891906 ~ 28892162 (+)
G14346 NA non-coding upstream 149054 28707296 ~ 28802417 (+)
G14353 NA non-coding upstream 226765 28723392 ~ 28724706 (+)
G14363 NA non-coding downstream 1396 28965219 ~ 28966857 (+)
G14429 NA non-coding downstream 100696 29064519 ~ 29064738 (+)
G14443 NA non-coding downstream 163643 29127466 ~ 29127678 (+)
G14459 NA non-coding downstream 296195 29260018 ~ 29260219 (+)
G14462 NA non-coding downstream 310592 29274415 ~ 29274761 (+)
rbfox1 rbfox1 other upstream 344382 28112046 ~ 28607089 (+)
LOC103031366 LOC105899914 other upstream 873653 28050129 ~ 28077818 (+)
G14047 NA other upstream 1910942 27009548 ~ 27040529 (+)
LOC103023549 gpr171 other upstream 3156387 25788584 ~ 25795084 (+)
mfrp mfrp other upstream 3278235 25660898 ~ 25673236 (+)
G14444 NA other downstream 165244 29129067 ~ 29129373 (+)
G14480 NA other downstream 431337 29395160 ~ 29398166 (+)
nubp1 nubp1,LOC107690260,LOC107685912 other downstream 710287 29674110 ~ 29720592 (+)
G14505 NA other downstream 769482 29733305 ~ 29742723 (+)
G14638 rps15a,MGC114789,RPS15A,LOC107686992 other downstream 1296854 30260677 ~ 30268382 (+)

Expression


Co-expression Network