c2h16orf72 (cunh16orf72,c2h16orf72,zgc:66160,LOC103025273,LOC105900007,LOC107590581,LOC107738628,LOC107685917)


Basic Information

Item Value
gene id c2h16orf72
gene name cunh16orf72,c2h16orf72,zgc:66160,LOC103025273,LOC105900007,LOC107590581,LOC107738628,LOC107685917
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 29000911 ~ 29008385 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007245560.3
GAACCAATCGCTTTCGCAAGGGCGGGGCTTTGTCGCCGAAAGCTTCGCGTTTTCATTTTATAACCCCAAACACGTCAGTGAAGTTGGACGGGTAGCTGGATGGGTGAAGATAAAGCTGAAAATCGTCTGAGATTTACTTTAGAGATGTTAGATATTAACTGAGGACAATAGCGGGTCTGTAATCACCTACATTTACACACGAATTTACAAACTTCAGCGCGGGGAAAACAGCTGACGGAGCGCGAAAGTTTGCCGAAGCGGAGGACatggaggagaagaaggaggagaagaggggGGCAGAGATCCAGGAGCACGGCCCGGAGCACTGGTTCTCCAGCTGGGAGAGGCAGTGCCTGGCCGAAGCCGAGCAGGACGAGCCTAGCGGGGGGGAGGAGGTCGACCAGAGCCAGGAGAAACTGTGGCACCTTTTCCAGAATTCAGCCACGGCCGTGGCGCAGCTTTATAAAGATCGAGTTTGCCACCAACAAGGACTCTCGCTCTGGGTGCCCTTTCAGAATGCTGCCACAGCAGTGACCAATCTTTACAAAgAGAGTGTAGACGCACATGAGAGGAGCTATGATCTAGGAATTCAGACTGGCCATCAGAGACGCAGTAAAGATGTTTTGGCTTGGGTGAAGAAACGAAGGAGGACTATCCGAAGGGAGGATTTGATAAGCTTTCTATGTGGCAAAGCACCTCCGCCAAGGATTTCAAGAGCAGCACCCAGACTGTCTCCTAACCGTCAACCTTCATCAGATACCGTGTCATCTGTAGAAACTGATTTACAACCGTTCCGTGAAGCCATAGCACTGCATGGTCTAAGTGGAGCGATGGCGAGCATTAGCGTGCGTTCCAGCACTCCTGGCTCCCCCACTCACGTCAGTAGCAGCTCCAACTCCAGCCGCAGGAGAAGCGGCTTTCACGACGTGGACTTGAACACTTTCATATCGGAGGAGATGGCGCTGCACCTGGACAGTGGCGGGAACAGAAAGCGGACATCAGCCCAGTGCACTGATGTCATCACAGACTCGCCGACCCATAAACGCAACAGGATGATATGAGCCTGGTCAGCAATCACAAACGCACTATGctgcttttttccttttcttttttttttggagaaaaataaaagccACTTAATCCTTCAGTACCTTCATGTCCCCTCCCTTTTAAAAGGAAAGGAAGCAAGGGCCATTGAACACCTCGCATCTCAGAGCTTCAATAATGACTGGCGTAAAGCTGACAGACAAGACCTatggacagagacagacagacttaCAGATGACTCGACAGACACATGGACCACTGctgtacctttttttttctttttgaatttAGAACAGCTTTGTTTTTACTACATTTTGCCACAAGGTGGAGTCAGTCCACGCAGGAAACAAAAGGAGTTCTGCACCCAGACGTGTGCTAACGTGGCTAACAGTGAATGAAGCAAACTGTGACCAGATACGTTGGTCTCATTTGCATATCGTTAGCCTGCTGTTACAACCGCCACTGCAGCGTTTTCTGCGATTTTTTGGAATTGGGTGCTGTTAAGAGTAAGTAGTTAACAAGATTAGATTCTGCCAGCTGCCAAAAGACACTGATCTTTATGATTTAACATATGGTAAATGAGAATTCCACTTATTTTCCTTCAATGAAGTCTGTATAATTAAGCCATTATGCTGAAAAGTGTCATTCAGAGTGATCTGGTATGAAATGGTTAATTACAGAGATAATGACTGATTCTAGATTTATGTTACAGCAATGATGAATGGATACAGCTGCCCCAATGATTATATATCACACAGATATAGTGATGCAGTATTTAAATTCTGTATTACTTATGATATatgtaatgcattcataagtAAATATTTGGATGGCTAATTTGTGTGAAGTCAAAAATTCTCGATTTCTTCTAAATCTCTTTCTTTAACCTACCTTTTAATAAGAGTTTGAGTTAAATTTGAATTTCTACAGTGCTACGTTTCACATCAGAACGCTCTGATTAACCAAGATGGACATCTTAATGGCTGaattaaacagaaaaatcacatttcGTGCATATTTAAGATAACTGCAGACAGGgattgtttaaaaatgaaagaactgATGATGGAAATACAAGAGAGATACAATTGAGaaattaatagaataaaaggtttataatgaa

Function

symbol description
zgc:66160 Is expressed in female organism. Orthologous to human C16orf72 (chromosome 16 open reading frame 72).

NR:

description
UPF0472 protein C16orf72 homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007245560.3 True 2170 mRNA 0.44 4 29000911 29008385

Neighbor

gene id symbol gene type direction distance location
LOC103024010 LOC106597007 coding upstream 37088 28951471 ~ 28963823 (+)
LOC103022544 pde6g,LOC108432842,LOC107733865,LOC107690252 coding upstream 98407 28901023 ~ 28902504 (+)
LOC103022852 arhgdib,gdir2,LOC108432841,LOC107590585,LOC107685923,LOC107568023,LOC106601960 coding upstream 109982 28828602 ~ 28890929 (+)
dnase1 dnase1l2 coding upstream 179070 28814118 ~ 28821841 (+)
abat abat,LOC107690246,LOC107738621,LOC107685926 coding upstream 251927 28697422 ~ 28748984 (+)
atf7ip2 atf7ip2 coding downstream 585511 29593896 ~ 29610385 (+)
ciita NA coding downstream 717928 29726313 ~ 29757199 (+)
clec16a clec16a coding downstream 753593 29761978 ~ 29864484 (+)
pigq pigq,LOC107690265,LOC107733876,LOC107590576 coding downstream 887167 29895552 ~ 29907786 (+)
rab40c rab40c,LOC107567894,LOC107685905,LOC107590575,LOC103366693,LOC107690266 coding downstream 904857 29913242 ~ 29942259 (+)
G14363 NA non-coding upstream 34054 28965219 ~ 28966857 (+)
G14369 clcn7 non-coding upstream 73258 28925784 ~ 28927653 (+)
G14364 NA non-coding upstream 76658 28903855 ~ 28924253 (+)
G14365 NA non-coding upstream 108749 28891906 ~ 28892162 (+)
G14346 NA non-coding upstream 198494 28707296 ~ 28802417 (+)
G14429 NA non-coding downstream 56134 29064519 ~ 29064738 (+)
G14443 NA non-coding downstream 119081 29127466 ~ 29127678 (+)
G14459 NA non-coding downstream 251633 29260018 ~ 29260219 (+)
G14462 NA non-coding downstream 266030 29274415 ~ 29274761 (+)
G14463 NA non-coding downstream 266576 29274961 ~ 29275432 (+)
rbfox1 rbfox1 other upstream 393822 28112046 ~ 28607089 (+)
LOC103031366 LOC105899914 other upstream 923093 28050129 ~ 28077818 (+)
G14047 NA other upstream 1960382 27009548 ~ 27040529 (+)
LOC103023549 gpr171 other upstream 3205827 25788584 ~ 25795084 (+)
mfrp mfrp other upstream 3327675 25660898 ~ 25673236 (+)
G14444 NA other downstream 120682 29129067 ~ 29129373 (+)
G14480 NA other downstream 386775 29395160 ~ 29398166 (+)
nubp1 nubp1,LOC107690260,LOC107685912 other downstream 665725 29674110 ~ 29720592 (+)
G14505 NA other downstream 724920 29733305 ~ 29742723 (+)
G14638 rps15a,MGC114789,RPS15A,LOC107686992 other downstream 1252292 30260677 ~ 30268382 (+)

Expression


Co-expression Network