RNA id: XM_007245560.3


Basic Information

Item Value
RNA id XM_007245560.3
length 2170
RNA type mRNA
GC content 0.44
exon number 4
gene id c2h16orf72
representative True

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 29000911 ~ 29008385 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GAACCAATCGCTTTCGCAAGGGCGGGGCTTTGTCGCCGAAAGCTTCGCGTTTTCATTTTATAACCCCAAACACGTCAGTGAAGTTGGACGGGTAGCTGGATGGGTGAAGATAAAGCTGAAAATCGTCTGAGATTTACTTTAGAGATGTTAGATATTAACTGAGGACAATAGCGGGTCTGTAATCACCTACATTTACACACGAATTTACAAACTTCAGCGCGGGGAAAACAGCTGACGGAGCGCGAAAGTTTGCCGAAGCGGAGGACatggaggagaagaaggaggagaagaggggGGCAGAGATCCAGGAGCACGGCCCGGAGCACTGGTTCTCCAGCTGGGAGAGGCAGTGCCTGGCCGAAGCCGAGCAGGACGAGCCTAGCGGGGGGGAGGAGGTCGACCAGAGCCAGGAGAAACTGTGGCACCTTTTCCAGAATTCAGCCACGGCCGTGGCGCAGCTTTATAAAGATCGAGTTTGCCACCAACAAGGACTCTCGCTCTGGGTGCCCTTTCAGAATGCTGCCACAGCAGTGACCAATCTTTACAAAgAGAGTGTAGACGCACATGAGAGGAGCTATGATCTAGGAATTCAGACTGGCCATCAGAGACGCAGTAAAGATGTTTTGGCTTGGGTGAAGAAACGAAGGAGGACTATCCGAAGGGAGGATTTGATAAGCTTTCTATGTGGCAAAGCACCTCCGCCAAGGATTTCAAGAGCAGCACCCAGACTGTCTCCTAACCGTCAACCTTCATCAGATACCGTGTCATCTGTAGAAACTGATTTACAACCGTTCCGTGAAGCCATAGCACTGCATGGTCTAAGTGGAGCGATGGCGAGCATTAGCGTGCGTTCCAGCACTCCTGGCTCCCCCACTCACGTCAGTAGCAGCTCCAACTCCAGCCGCAGGAGAAGCGGCTTTCACGACGTGGACTTGAACACTTTCATATCGGAGGAGATGGCGCTGCACCTGGACAGTGGCGGGAACAGAAAGCGGACATCAGCCCAGTGCACTGATGTCATCACAGACTCGCCGACCCATAAACGCAACAGGATGATATGAGCCTGGTCAGCAATCACAAACGCACTATGctgcttttttccttttcttttttttttggagaaaaataaaagccACTTAATCCTTCAGTACCTTCATGTCCCCTCCCTTTTAAAAGGAAAGGAAGCAAGGGCCATTGAACACCTCGCATCTCAGAGCTTCAATAATGACTGGCGTAAAGCTGACAGACAAGACCTatggacagagacagacagacttaCAGATGACTCGACAGACACATGGACCACTGctgtacctttttttttctttttgaatttAGAACAGCTTTGTTTTTACTACATTTTGCCACAAGGTGGAGTCAGTCCACGCAGGAAACAAAAGGAGTTCTGCACCCAGACGTGTGCTAACGTGGCTAACAGTGAATGAAGCAAACTGTGACCAGATACGTTGGTCTCATTTGCATATCGTTAGCCTGCTGTTACAACCGCCACTGCAGCGTTTTCTGCGATTTTTTGGAATTGGGTGCTGTTAAGAGTAAGTAGTTAACAAGATTAGATTCTGCCAGCTGCCAAAAGACACTGATCTTTATGATTTAACATATGGTAAATGAGAATTCCACTTATTTTCCTTCAATGAAGTCTGTATAATTAAGCCATTATGCTGAAAAGTGTCATTCAGAGTGATCTGGTATGAAATGGTTAATTACAGAGATAATGACTGATTCTAGATTTATGTTACAGCAATGATGAATGGATACAGCTGCCCCAATGATTATATATCACACAGATATAGTGATGCAGTATTTAAATTCTGTATTACTTATGATATatgtaatgcattcataagtAAATATTTGGATGGCTAATTTGTGTGAAGTCAAAAATTCTCGATTTCTTCTAAATCTCTTTCTTTAACCTACCTTTTAATAAGAGTTTGAGTTAAATTTGAATTTCTACAGTGCTACGTTTCACATCAGAACGCTCTGATTAACCAAGATGGACATCTTAATGGCTGaattaaacagaaaaatcacatttcGTGCATATTTAAGATAACTGCAGACAGGgattgtttaaaaatgaaagaactgATGATGGAAATACAAGAGAGATACAATTGAGaaattaatagaataaaaggtttataatgaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU19265 lncRNA upstream 34054 28965219 ~ 28966857 (+) True G14363
TU19271 lncRNA upstream 73258 28925784 ~ 28927653 (+) True G14369
TU19266 lncRNA upstream 76658 28903855 ~ 28924253 (+) True G14364
TU19267 lncRNA upstream 108749 28891906 ~ 28892162 (+) True G14365
TU19239 lncRNA upstream 198494 28797685 ~ 28802417 (+) True G14346
TU19358 lncRNA downstream 56134 29064519 ~ 29064738 (+) True G14429
TU19372 lncRNA downstream 119081 29127466 ~ 29127678 (+) True G14443
TU19388 lncRNA downstream 251633 29260018 ~ 29260219 (+) True G14459
TU19391 lncRNA downstream 266030 29274415 ~ 29274761 (+) True G14462
TU19392 lncRNA downstream 266576 29274961 ~ 29275432 (+) True G14463
XM_007245555.3 mRNA upstream 37088 28951471 ~ 28963823 (+) True LOC103024010
XM_007245550.3 mRNA upstream 98407 28901023 ~ 28902504 (+) True LOC103022544
XM_007245552.3 mRNA upstream 109982 28828602 ~ 28890929 (+) False LOC103022852
XM_007245551.3 mRNA upstream 109982 28841277 ~ 28890929 (+) True LOC103022852
XM_022675889.1 mRNA upstream 179070 28815243 ~ 28821841 (+) False dnase1
XM_015604879.2 mRNA downstream 585511 29593896 ~ 29609211 (+) False atf7ip2
XM_007245565.3 mRNA downstream 585512 29593897 ~ 29609404 (+) True atf7ip2
XM_007245564.3 mRNA downstream 585512 29593897 ~ 29609211 (+) False atf7ip2
XM_015604880.2 mRNA downstream 585541 29593926 ~ 29610385 (+) False atf7ip2
XM_007245568.3 mRNA downstream 585542 29593927 ~ 29610385 (+) False atf7ip2
TU19049 other upstream 944011 28050129 ~ 28056900 (+) False LOC103031366
TU18843 other upstream 1960382 27009548 ~ 27040529 (+) True G14047
TU18257 other upstream 3327722 25668748 ~ 25673189 (+) False mfrp
TU18064 other upstream 3944808 25052513 ~ 25056103 (+) True G13445
TU17784 other upstream 4143889 24855933 ~ 24857022 (+) True G13237
TU19373 other downstream 120682 29129067 ~ 29129373 (+) True G14444
TU19421 other downstream 386775 29395160 ~ 29398166 (+) True G14480
TU19448 other downstream 665789 29674174 ~ 29689149 (+) False nubp1
TU19455 other downstream 724920 29733305 ~ 29742723 (+) True G14505
TU19643 other downstream 1252292 30260677 ~ 30268382 (+) False G14638

Expression Profile