RNA id: TU19373


Basic Information

Item Value
RNA id TU19373
length 307
RNA type TUCP
GC content 0.41
exon number 1
gene id G14444
representative True

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 29129067 ~ 29129373 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ccatgatctgctttctctcactcactgaacaaatcccgtccgggagggggggaaaacactgcccgcccacactaaaaactgattggctgtctcacagactctttgcagagaacaggccaatcagaaccctctctgttttctctctctccttcccacacgcgattagagaaaaaaagtctgtggcctgtgtgcgcgtttggggcgctcgttctgaattctgggagattatatgtgactcgcgagcatcagggagccactaccgaaatgcgggagactcccgcagcttcagggagacttggtttgtctg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU19372 lncRNA upstream 1389 29127466 ~ 29127678 (+) True G14443
TU19358 lncRNA upstream 64329 29064519 ~ 29064738 (+) True G14429
TU19281 lncRNA upstream 118032 28952651 ~ 29011035 (+) True G14377
TU19265 lncRNA upstream 162210 28965219 ~ 28966857 (+) True G14363
TU19271 lncRNA upstream 201414 28925784 ~ 28927653 (+) True G14369
TU19388 lncRNA downstream 130645 29260018 ~ 29260219 (+) True G14459
TU19391 lncRNA downstream 145042 29274415 ~ 29274761 (+) True G14462
TU19392 lncRNA downstream 145588 29274961 ~ 29275432 (+) True G14463
TU19394 lncRNA downstream 156000 29285373 ~ 29285707 (+) True G14465
TU19424 lncRNA downstream 266544 29395917 ~ 29397747 (+) True G14481
XM_007245560.3 mRNA upstream 120682 29000911 ~ 29008385 (+) True c2h16orf72
XM_007245555.3 mRNA upstream 165244 28951471 ~ 28963823 (+) True LOC103024010
XM_007245550.3 mRNA upstream 226563 28901023 ~ 28902504 (+) True LOC103022544
XM_007245552.3 mRNA upstream 238138 28828602 ~ 28890929 (+) False LOC103022852
XM_007245551.3 mRNA upstream 238138 28841277 ~ 28890929 (+) True LOC103022852
XM_015604879.2 mRNA downstream 464523 29593896 ~ 29609211 (+) False atf7ip2
XM_007245565.3 mRNA downstream 464524 29593897 ~ 29609404 (+) True atf7ip2
XM_007245564.3 mRNA downstream 464524 29593897 ~ 29609211 (+) False atf7ip2
XM_015604880.2 mRNA downstream 464553 29593926 ~ 29610385 (+) False atf7ip2
XM_007245568.3 mRNA downstream 464554 29593927 ~ 29610385 (+) False atf7ip2
TU19049 other upstream 1072167 28050129 ~ 28056900 (+) False LOC103031366
TU18843 other upstream 2088538 27009548 ~ 27040529 (+) True G14047
TU18257 other upstream 3455878 25668748 ~ 25673189 (+) False mfrp
TU18064 other upstream 4072964 25052513 ~ 25056103 (+) True G13445
TU17784 other upstream 4272045 24855933 ~ 24857022 (+) True G13237
TU19421 other downstream 265787 29395160 ~ 29398166 (+) True G14480
TU19448 other downstream 544801 29674174 ~ 29689149 (+) False nubp1
TU19455 other downstream 603932 29733305 ~ 29742723 (+) True G14505
TU19643 other downstream 1131304 30260677 ~ 30268382 (+) False G14638
XR_002650771.1 other downstream 1618303 30747676 ~ 30772114 (+) False LOC103032125

Expression Profile