RNA id: XM_015604879.2


Basic Information

Item Value
RNA id XM_015604879.2
length 2289
RNA type mRNA
GC content 0.49
exon number 13
gene id atf7ip2
representative False

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 29593896 ~ 29610385 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AGAAAGACATTCATGAGGGATTCTACAGGACTGGGAGCAGGACAGATACTTCAGGACTGACACTACAGGACTGATACTACAGGACTGTAGTAGTATCTGTGTCAGCAGCATCCACACCTGGTTGTATGTTGGTGAAGTGGAGCTGCTTCCACTGAGCCCCTCCTTCTTTTCCCCAGTCAGGCTGTGTGCAGGAAAACGCGGAGCTACAGACACAGATCACTCTAcagattttacattattatcCGCTTTTTATATCAGTTACAGaaaaaatgaaaaggagGAGACCTGACGAGGAATTGTTTGATTGTGGGGCAACCTCTGCAGCACTCTCTAAAGTTGAGGTTCGAAGGATGGTCTCCCATGAGGTGCGTGCAGCTGTTGAAAGGTCTGACACGATGATGAAAGCTCTGATGGAGAGAATTCAGGAGATAGACAGTGAACCTAAATATGATGCAAGGCTCAAAAAACTGGGGgCACATGTTAAAAAGATCAAGCGAAGAGGGGATGCAGCTTTTGCGTTTATAAGAAAAGAGTTGCACCAGAAAAAGcagcagccaacAAACTCTCTTCCATGTATATCCGACACAAGAAGATTCAGTTCTGCCAATGGAGGATGTTCTGATGACAGCACGTCGGCATCAGCAGcCATAGAGATCAACGATGAGGGAGAAGGAGCCGCAAGAAAACCTAAAGAAGGCTTCTGGCAGAGACTGCGATCCAAGCAAGAGATTGTGGACCTGACGGATGAAGGCGAAGATGCAGTGACCATAAAAAACGGCGGAAACCACAGTGATACCCCTCCACCTCCAGTGCTGAAACGAGAGGAAATCACTGCAAATGGCCCCAATACGGCACCGGTTAGGAGACTTGCTTACGAAGCGGATTTCAAACTCAAGGCTATCCGTCACGCAGTAGAGCACGGGAATAGAGCGGCTGCGAGAGAATTCAACGTTAATGAGTCGATGGTGCGGAAGTGGAGGAAGCAAGAATATGACCTGCTCCAAGTAAAGAAGACCAGACAGAGCTTCCGAGGGAAAAAGGCGAGATGGCCAGATTTGGAGGACCGAGTCGAACAGTGGGTTATTGAACAGAGAACAGTAGGTAGAAGCGTCTCTACAGTCTCTATCCGACTCAAGGCAGCGGCGGTAGCACGAGACATGAACATCGATGACTTCCGAGGAGCTCCTTCTTGGTGCTTCCGCTTTATGAAAAGGCGCAATATCTCCATCCACCCGAGAAATACCGCCTCGCCGAAACTGACTAAGGATTATGAAGAAACATTGGCTTTTTTCCGCGACTACTGCAAAAACAAGATCACTGAAAAGAAGATCCGGCCAGAGCACATCACCAACATGGACGAGGTCCCCCTCAGCTTTGACATCCCCGTGAACTGTACTGTGGAGGCAACAGGGACCAATTCAGTGTCTATACACGCCACAGAATACGAGAAGTCCTCCTTCACTGTAGTTCTCAGTTGCCAGGCTAATGGTCAGAAGCTACCTCCCATGGTCATTTTTAAGAGCAAGACTTTGCCAAAAGAGACGTTTCCATCCGGCGTCATCGTCAAGGCTAACCCAAAGGGCTGGATGGACGAGGAGATGATGAGTGAGTGGCTGAGAGAAGTTTACGCCAACAGATCGAATGGCTTTTTCCATCAATCTCCGTCCTTATTAATCTGCGATTCCATGCACGCCCATCTCAACGATACTGTCAAAACCCAAGTACAGCAAACCAATTCAGAGCTAGCCATCATTCCAAGTGGATTCACCAAAGAACTCCAGCCACTAGATATCGGTGTGAACAGGTCGTTTAAAGTTAAACTGCGAGCTGTGTGGGAGCGCTGGATGACCGAAGGCGAACGCTCATTCGTCAAGACAGGGAAGCAACGCCTAGCGAGTTACGGCACTATCTGCCAATGGATCGTGGATGCCTGGGTTAAGGTGTCAGTCTCGAGCGTCGTCCGAGCTTTCACCATGTCCGGAATCATCACTGAACAGCTAAATTACAGCAACGAGACTGACTCTGATAATGACGAGAGGGAGCCGGGCGTGCTTAATGCTGAAATCGCCCACCTGTTAAACTCGGACACTGAAGATGAAGGATTTGATGGATTTGTGGAAGAGGAATTAACTGAAAAAAACCGTCAAAACCTTCATATCCGGTTCTAGAGGAAAGCAAGAAACCGCCTGTGGAAGAAACTCGGCAGGGTAGCCTGCAGTTCAGACTTCCTCGGTTGCCGGACCTGCCGTTCCCCAGTCAGCTGCCTGCAGCCGCTGCCACCAAAAACCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU19427 lncRNA upstream 171045 29405159 ~ 29422851 (+) True G14483
TU19416 lncRNA upstream 192645 29399304 ~ 29401251 (+) False G14477
TU19413 lncRNA upstream 192645 29399991 ~ 29401251 (+) True G14477
TU19424 lncRNA upstream 196149 29395917 ~ 29397747 (+) True G14481
TU19425 lncRNA upstream 196739 29396378 ~ 29397157 (+) True G14482
TU19452 lncRNA downstream 69165 29678376 ~ 29679037 (+) True G14502
TU19459 lncRNA downstream 120953 29730164 ~ 29730572 (+) True G14506
TU19457 lncRNA downstream 124688 29733899 ~ 29742723 (+) False G14505
XR_002650756.1 lncRNA downstream 132575 29741786 ~ 29742733 (+) True LOC111193871
TU19622 lncRNA downstream 429273 30038484 ~ 30038697 (+) True G14619
XM_007245560.3 mRNA upstream 585511 29000911 ~ 29008385 (+) True c2h16orf72
XM_007245555.3 mRNA upstream 630073 28951471 ~ 28963823 (+) True LOC103024010
XM_007245550.3 mRNA upstream 691392 28901023 ~ 28902504 (+) True LOC103022544
XM_007245552.3 mRNA upstream 702967 28828602 ~ 28890929 (+) False LOC103022852
XM_007245551.3 mRNA upstream 702967 28841277 ~ 28890929 (+) True LOC103022852
XM_022676010.1 mRNA downstream 64899 29674110 ~ 29720592 (+) True nubp1
XM_022677990.1 mRNA downstream 117102 29726313 ~ 29757199 (+) True ciita
XM_022676068.1 mRNA downstream 152767 29761978 ~ 29864484 (+) False clec16a
XM_022676034.1 mRNA downstream 152767 29761978 ~ 29860346 (+) True clec16a
XM_022676058.1 mRNA downstream 152767 29761978 ~ 29860346 (+) False clec16a
TU19421 other upstream 195730 29395160 ~ 29398166 (+) True G14480
TU19373 other upstream 464523 29129067 ~ 29129373 (+) True G14444
TU19049 other upstream 1536996 28050129 ~ 28056900 (+) False LOC103031366
TU18843 other upstream 2553367 27009548 ~ 27040529 (+) True G14047
TU18257 other upstream 3920707 25668748 ~ 25673189 (+) False mfrp
TU19448 other downstream 64963 29674174 ~ 29689149 (+) False nubp1
TU19455 other downstream 124094 29733305 ~ 29742723 (+) True G14505
TU19643 other downstream 651466 30260677 ~ 30268382 (+) False G14638
XR_002650771.1 other downstream 1138465 30747676 ~ 30772114 (+) False LOC103032125
TU20118 other downstream 2431851 32041062 ~ 32045058 (+) False smim13

Expression Profile