RNA id: XM_022676058.1


Basic Information

Item Value
RNA id XM_022676058.1
length 5844
RNA type mRNA
GC content 0.48
exon number 24
gene id clec16a
representative False

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 29761978 ~ 29864484 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GGCGTAGAGCCGGGGCTGCTGTATCCGGTGCGGGTGTCAGTTAGCTGTTAGCGATGTTTTGGCGATTTTCCGCGGCTGTGATGGGATTATTGAGCCTGGTTTAGAGACAGTAATAAAGGTGACAGCGGGAGTAAAGCCGCAGCGATGTTCGGCCGGTCCCGGAGCTGGGTTGGTGGGCAGGGGAAAGCCAAAAACATCCATTCCCTGGATCATTTAAAGTACATGTATCATGTCCTGATGAAGAACACGACGGTGACTGATCACAACCGCAACTTACTGGTTGAGACAATTCGCTCCATCACTGAAATCCTTATCTGGGGGGATCAGAATGACAGTTCTGTTTTTGAcTTCTTTTTGGAGAAGAACATGTTCGCGTTCTTCCTCAACATTTTACGGCAGAAGTCAGGCCGGTATGTTTGTGTCCAGCTCTTGCAGACGCTCAACATCCTCTTTGAGAACATAAGTCATGAGACGTCTCTCTATTACCTGCTGTCCAATAATCATGTTAATTCCATCATTGTTCATAAATTCGACTTCTCGGATGAGGAAATCATGGCCTACTACATCTCCTTCTTAAAGACCCTGTCCCTGAAACTCAACAACCACACTGTACATTTCTTTTACAATGAGCACACTAATGATTTTGCCCTGTACACGGAGGCCATTAAGTTTTTCAACCACCCAGAGAGCATGGTCAGGATCGCAGTCAGGACTATCACTCTCAATGTGTATAAAGTCTCATTGGACAACCAGCACATGCTGCACTACATCCGGGACAAAACCGCCGTGCCCTACTTCTCTAACCTGGTGTGGTTCATCGGCAGCCACGTCATCGAGCTGGACAAGTGTGTTCAGACAGATGAAGAGCATAAAAACAGAGGGAAGCTGAGTGACCTGGTTGCGGAGCACCTGGATCATCTTCACTATCTCAACGACATCCTCACCATCAACTGCGAGTTCCTCAACGACGTGCTGACGGACCATTTGCTCAACCGCCTCTTCCTGCCCCTCTACGTTTACTCGCTGGTCACCCAGCAGCAGGGTGAAGACCGCAAGATCAACCCTCAAGTGTCACTTTACCTGCTCTCCCAGGTGTTCCTCATTATCCACTACCAGCCCCTGGTGAACGCTCTGGCTGACGTTATTCTGAATGGAGACTTGACTGTTTTCTCAGCTCAGGCGGAGCAGAACATGCACAAGCCCTCAtctaacAGTGGAGTGCGCCGCTTCACCAAGCCCCCCGAGAGTCTGGAGCGTTCTCTGGAGATGAGTCGGCAGCGCGGCAGGAAGAGAACCCAGAAACGGCCCAACTACAAGAACGTgggggaggaggaagaggaggagagggggCCTGAGGAAGGCAcggaggaggagaaagaaaaggCTAAAGGTACAGAGGCTAGCTCAAAGCCCAGCAGGACGTGTGGGGACACGGAAGagaTTGAAATGGTGGTGATGGAGAAGTGTAAGCTGTCAGACGTGTCCGGCCTGACCGAGCAGAACATCACTGATGAGGAGAAAAcggctgcagctgctgctcGAACCGAGGGCCAGAGGAGCAGACCCTTCTTGGACATGGTGTATAACGCCCTGGACTGCGAGCTGGAGGACTACCACGCCCTTTTCGTCCTCTGCCTCCTCTTCGCCATGTCTCACAGCAAAGGAATAAACCCAGAGCTGTTGGAGAAGATCCAGCTGCCTGTACCTGGGCAGGAGAGGAGCAGTTACAGCCAAGTTCTGGTGGAGAGGCTGATCAGAATCATGAACCAGGCTGCTCAGCCAGACGGGAGGGTACGGCTGGCCACTCTGGAGCTGTGCTGTCTTCTACTCAAGCAGTCGGTCCTCTCCAACACTCAGTGCATCATCAAGGACGTCCACCTGGCCTGTCTGGAGGGTGCTAGAGAGGAGAGTCTCCACCTGCTGCGCCGCTTTTACAAGGGGGAAGAGATCTTCCTGGACATGTTTGAAGACGAGTACAGGAGCATGACTAGTAAGCCTCTGAATGTGGAGTACCTCATGATGGACGCGTCCATCCTGCTTCCCCCGACTGGAACGCCCCTCACTGGCATTGACTTCGTTAAGAGGTTGCCCTGCGGAGACGTGGAGAAGACACGCAGGgCTATCCGAGTGTTCTTCATGCTCCGGGCGCTGTCTCTACAGCTTCAGGGAGAACCAGAGACCCAGCTTCCCCTGACCCGCCCAGAGGACCTCATTAAAACAGACGATGTCCTTGACCTCAATAACAGTGATTTGATCGCCTGCATGGTGGTGAGTAAAGATGGCATTCAGGCACAGCGCTTCCTGGCTGTGGACGTGTATCAGATGAGTCTGGTGGAACCGGATACCAAGCGATTGGGCTGGGGAGTTGTGAAGTTCGCCGGCCTTCTACAGGACATGCAGGTGTCTGGAGTGGAGGACGACAGTAGGGCGCTGAACATCACCATCCACAAGCCCACCTCCAACCCCCACGCGAAGCCCCTCCCCATCCTGCAGGCCTCCTTCATCTTCGCTGATCACATTCGCTGCATCATCGCCAAGCAGAGGCTGGCCAAAGGTCGCATTCAGGCCCGGCGTATGAAGATGCAGAGGATAGCTGCTCTTCTGGACCTCCCTGTCCAGCCGTCGTCTGAAGTTCTGGGTTTTGGTCAGCCTGCAGCTTCATCCTCTCAGCTGCCCTTCCGCTTCTACGACCAGGCCCGACGAGGCCCCGCCTTCGCCTCTGTAGATAAAGTTCCAGGTTTTGCAGTGGCCCATGTCGCCCAGCACAGTCCCTCGCCCCTGTCCTCCCCCTCCCCCAGCTCCAGTGGCAGCACCAGTCACTGTGACTCGGTCACGGCCAGCAGCGTGTCGGTGCAGTCTGCCACACAGAGCCCATCAGCCCCTGCCCTCGCCCCCAGCCTGACGCCCGCCGCCCAGCCCACCATCTCTCTGCTGTCGGACGCCGACGCCGAGACGCTCAGCGTGGACTCCCTCACCCTGCTGCCTCCAGCCGACCCGCCCCGCCTGCGCTCCTTCAGCACCCAGTCCTCCGCCCAGGAGGAGGCGCCGGACGCCACCCAGCACGAGCACGCCGAGCCCGTCTCAGACCCGCCCCCAGACGACGACGGCAACGGCGAGAACACACAGGAAGAGGACAGGAAGGACATTAGCGTCATACCAGAGGAAGACGAGCCTTCTCCTGATTCAGAGCCAGCAGAGACCAGGCCTCCAAACACGGACTCGTCCAGAGAGGAAGCCCAGACTCAGGCAGAGTCTGAACCTGCCGTTAACcctcacctgtcagacctcgaGGACAACCCTGACCTCGAGCAGGAGACCGAAATAGACTGAAATAGTGGAGCAGGTCTGAGTGGACAACTCCAGTCCAGTGGAGACCACCACTGGGAAGCAGCTCAGTCCTTACAGCGACAGTCTGGCGACAAACGTGCAGAAATATTTGCTCAGTTTTCCCCTTCATCCAAGTTTAGGTGGTATAGAAGTAATACCTTAAAAATTATACCTTTATACATTGGAttagtttaaagtttttttcacCGTTTTCCACCGAACATATAATTGGGTTCTACCACATTACACACTTATTTTTAAAGATCACCAtaccttattaaaaaaaacaaaaaacgagAGCCacaaaggatacatcagctgcgtccttTAAATTACTATAAATTACTCTGAACTTTGGCTTCCTGTCCATCATAGCTCTAACTCTTCCAATACCATTGTTCTTTATGTCAAATCAGAAAACAATACCAATATTCCCACAGTGAGGATGATAAACTGTCAATGACTTGAAGGAACTCCTTGAAGGACGACTTTGAGACTTTGACCAGCAACTACGCCACTAGAACTTAGATTTCAGAACTAGGATTCTCAGATTAAGTGACCGGTTTAATTCTTATATGAAGGGAAAATTCTGTCAGACAGGctgaggaaaacctggaaacTAACCTTAGAGAGAGTCTTAGAAAATAAATTGTGTCTATTTTATGTTGATCCAACGCTTTGACCAGGGAGTTTTCCTCCATAGATTTGTTTTTGCGAGCTCCACAGCTAATaagacaaataataatattaatgggtaaaataatgcaaataaacgAGAGCCtcgaaggatacatcagctgcgtccttTAATTAATCACTCTGAAATTTGGCTTCCTGTCCATCATAGCGCTAACTCTTCCAATACCTTTGTTCTTTATGTCAAAACAGAACACAATACCTTCATTTCCACATTCCAGGATGACTCAACTGTAGAGTGACCGTGTGTAGACAGTGTTTACAGTTCCAATTCAGAGTGTGAGGGCTTTAAaagacatgtaaaaaaaaaaactatttgagGGACAACTTTGAGACTTTGACCAGCAATTATGTCACTAGAACTTAAATTTCAGAACCAGGATTCTTAGATTGAGTGACCAGTGTATTCTCTAACTGAGGGAACTCAAGTTAGGGTTAATTCTATCAGACAGGCAGAAGAAAACCTGGAAACTAACCTTAGAAAGAGTCTTAGAGAAGAAATAATGTCTATGTTATGTTGATCCAACGCTTTCACCTGGGAACTTTCCTCTGTAGATTTGTTTTTGTGAGCTCCAAAGCTAATAAGACAAATAATTGTGTTCTACACACCACAGtacacatttctttttaaaggtcaccttgccttattgaaaaaaaaaaacaagagccacaaaggatacatcagctgcgtccttTAAAAAATCACTCTGTCCAGATTCCTTTTGATTCTTCCAATACCTTTGCCCAACATTCCCACATTCTAGGATGAAGCACTGTAGAGTGGATAGTGTGTACAGGTACAAATAAGAGTGTGAGGGCTTTTAAAGACATTAAGGAACTTTTTGAAGAACGACTTTGAGACTTTGACCAGCAATTACGTCACTAGAACTTAAATTTCATCACTAGGGTTCTTAGATTGAGTGACCGATGTAATCCTTATCCAAAGGAAATTTGAGTTAAGAACAATTCTGTCAGACGGGCTGAAGAAAACCTGGAAAATAACCTTAAAGAGAGTCTCAGAGAAGAAATCATGTCTATGTTATGTTGATCCAATTCTTTGACCAGGGAGTTTCCCAGTTTCCCAGAGTGGGACCAAACTAAGGAAACCGTGTCTGATATTTCAGTAAACTTGACCTACTTTTATAGTTGAGGAAAGAAGGGTAAAGCTGAGCAAACTGCGCTTGGAGTTGTGCCGAGCGTCGCTGTGAGCCTGGTCGTGTCCGTGTATCGGTTAATGATTTATGTGAACGCTTGTCTTTGTAGTTTTTGGAACGCAGAGTTTTTGcatactttctctttctttagaACAGTGATGCTTTCATGGGAACAAAGGTGTTCTTGATGGTCGATGAAGTCGTTCAAAGCACAGCTTTGTTatgattgttttttgtttttctttgtcttcttcatctGAGCACCATTGTTTTGTGGTCTTCTGTCATGGTGCTGTGTGTTTGGGCGGCGTTGAGTTGTGTGAATGAGtggactgattgattgattgattaattgattgaatgagatgagtgtgagagaaatgagagcgagagagagagagagagagagggatggagatcGTAAAGCAGGTTTGTTTTTGTAAGTATGTTCAAGTGGGTGAATGAGTGCCCACTGAGTTTtaccagtcttaaacactgaGGAATGTACAAAGACTTTTGGGTCTGTCCAGCGGTGCTTTCTCCTGGAGGACTACTTCACTTTGACTGAACGTGAATTTGCACTTCAACAGTAGCTTTGTCTGAAAGCCCTTTGAATTattgctttttgctttttgcttttttgctttttgcctttttctttagtttg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002650756.1 lncRNA upstream 19245 29741786 ~ 29742733 (+) True LOC111193871
TU19457 lncRNA upstream 19255 29733899 ~ 29742723 (+) False G14505
TU19459 lncRNA upstream 31406 29730164 ~ 29730572 (+) True G14506
TU19452 lncRNA upstream 82941 29678376 ~ 29679037 (+) True G14502
TU19436 lncRNA upstream 148205 29607878 ~ 29613773 (+) True G14488
TU19622 lncRNA downstream 178138 30038484 ~ 30038697 (+) True G14619
TU19628 lncRNA downstream 213653 30073999 ~ 30074475 (+) True G14625
TU19632 lncRNA downstream 362221 30222567 ~ 30234151 (+) True G14629
TU19644 lncRNA downstream 400331 30260677 ~ 30268382 (+) False G14638
TU19645 lncRNA downstream 400331 30260677 ~ 30265961 (+) True G14638
XM_022677990.1 mRNA upstream 4779 29726313 ~ 29757199 (+) True ciita
XM_022676010.1 mRNA upstream 41386 29674110 ~ 29720592 (+) True nubp1
XM_007245568.3 mRNA upstream 151593 29593927 ~ 29610385 (+) False atf7ip2
XM_015604883.2 mRNA downstream 35206 29895552 ~ 29907786 (+) False pigq
XM_007245577.3 mRNA downstream 36114 29896460 ~ 29907786 (+) True pigq
XM_007245579.3 mRNA downstream 52896 29913242 ~ 29942259 (+) True rab40c
XM_022676094.1 mRNA downstream 245511 30105857 ~ 30219133 (+) True LOC103042681
XM_007245583.3 mRNA downstream 408842 30269188 ~ 30278439 (+) True c2h17orf75
TU19455 other upstream 19255 29733305 ~ 29742723 (+) True G14505
TU19448 other upstream 72829 29674174 ~ 29689149 (+) False nubp1
TU19421 other upstream 363812 29395160 ~ 29398166 (+) True G14480
TU19373 other upstream 632605 29129067 ~ 29129373 (+) True G14444
TU19049 other upstream 1705078 28050129 ~ 28056900 (+) False LOC103031366
TU19643 other downstream 400331 30260677 ~ 30268382 (+) False G14638
XR_002650771.1 other downstream 887330 30747676 ~ 30772114 (+) False LOC103032125
TU20118 other downstream 2180716 32041062 ~ 32045058 (+) False smim13
TU20119 other downstream 2180716 32041062 ~ 32045058 (+) False smim13
TU20126 other downstream 2314055 32174401 ~ 32178598 (+) True G14985

Expression Profile