Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU19455 |
| length | 616 |
| RNA type | TUCP |
| GC content | 0.36 |
| exon number | 9 |
| gene id | G14505 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_035898.1 |
| NCBI id | CM008301.1 |
| chromosome length | 34292151 |
| location | 29733305 ~ 29742723 (+) |
| genome version | Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome |
| species | mexican tetra (Astyanax mexicanus) |
| id | name | namespace |
|---|---|---|
| GO:0048884 | neuromast development | biological_process |
| GO:0042611 | MHC protein complex | cellular_component |
| GO:0042612 | MHC class I protein complex | cellular_component |
| id | description |
|---|---|
| ko04612 | Antigen processing and presentation |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU19459 | lncRNA | upstream | 2733 | 29730164 ~ 29730572 (+) | True | G14506 |
| TU19452 | lncRNA | upstream | 54268 | 29678376 ~ 29679037 (+) | True | G14502 |
| TU19436 | lncRNA | upstream | 119532 | 29607878 ~ 29613773 (+) | True | G14488 |
| TU19427 | lncRNA | upstream | 310454 | 29405159 ~ 29422851 (+) | True | G14483 |
| TU19416 | lncRNA | upstream | 332054 | 29399304 ~ 29401251 (+) | False | G14477 |
| TU19622 | lncRNA | downstream | 295761 | 30038484 ~ 30038697 (+) | True | G14619 |
| TU19628 | lncRNA | downstream | 331276 | 30073999 ~ 30074475 (+) | True | G14625 |
| TU19632 | lncRNA | downstream | 479844 | 30222567 ~ 30234151 (+) | True | G14629 |
| TU19644 | lncRNA | downstream | 517954 | 30260677 ~ 30268382 (+) | False | G14638 |
| TU19645 | lncRNA | downstream | 517954 | 30260677 ~ 30265961 (+) | True | G14638 |
| XM_022676010.1 | mRNA | upstream | 12713 | 29674110 ~ 29720592 (+) | True | nubp1 |
| XM_015604880.2 | mRNA | upstream | 122920 | 29593926 ~ 29610385 (+) | False | atf7ip2 |
| XM_007245568.3 | mRNA | upstream | 122920 | 29593927 ~ 29610385 (+) | False | atf7ip2 |
| XM_007245567.3 | mRNA | upstream | 122920 | 29593928 ~ 29610385 (+) | False | atf7ip2 |
| XM_007245566.3 | mRNA | upstream | 122920 | 29593929 ~ 29610385 (+) | False | atf7ip2 |
| XM_022676068.1 | mRNA | downstream | 19255 | 29761978 ~ 29864484 (+) | False | clec16a |
| XM_022676034.1 | mRNA | downstream | 19255 | 29761978 ~ 29860346 (+) | True | clec16a |
| XM_022676058.1 | mRNA | downstream | 19255 | 29761978 ~ 29860346 (+) | False | clec16a |
| XM_022676053.1 | mRNA | downstream | 19255 | 29761978 ~ 29860346 (+) | False | clec16a |
| XM_022676043.1 | mRNA | downstream | 19255 | 29761978 ~ 29860346 (+) | False | clec16a |
| TU19448 | other | upstream | 44156 | 29674174 ~ 29689149 (+) | False | nubp1 |
| TU19421 | other | upstream | 335139 | 29395160 ~ 29398166 (+) | True | G14480 |
| TU19373 | other | upstream | 603932 | 29129067 ~ 29129373 (+) | True | G14444 |
| TU19049 | other | upstream | 1676405 | 28050129 ~ 28056900 (+) | False | LOC103031366 |
| TU18843 | other | upstream | 2692776 | 27009548 ~ 27040529 (+) | True | G14047 |
| TU19643 | other | downstream | 517954 | 30260677 ~ 30268382 (+) | False | G14638 |
| XR_002650771.1 | other | downstream | 1004953 | 30747676 ~ 30772114 (+) | False | LOC103032125 |
| TU20118 | other | downstream | 2298339 | 32041062 ~ 32045058 (+) | False | smim13 |
| TU20119 | other | downstream | 2298339 | 32041062 ~ 32045058 (+) | False | smim13 |
| TU20126 | other | downstream | 2431678 | 32174401 ~ 32178598 (+) | True | G14985 |
