LOC111193871


Basic Information

Item Value
gene id LOC111193871
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 29741786 ~ 29742733 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002650756.1
GATGCTTTGATTGAGTCTCTGAAGGATGAATTCGAAACACTGGATGCAGAAGCTGAGTGTCCCATCCTGGTGAAAGAGGAAAACGAAAATGGGAAAAAGCCCAAGAGGAAACGACcagCAGTTGAAAGATCATCAAGGAAAAGGCGTCGCCTCAATCAGAAGAAGCCAGGTAAGCTCACCtgcactatctatctatctatctatctatctatctatctatctatctatctat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002650756.1 True 232 lncRNA 0.42 3 29741786 29742733

Neighbor

gene id symbol gene type direction distance location
atf7ip2 atf7ip2 coding upstream 131401 29593896 ~ 29610385 (+)
c2h16orf72 cunh16orf72,c2h16orf72,zgc:66160,LOC103025273,LOC105900007,LOC107590581,LOC107738628,LOC107685917 coding upstream 733401 29000911 ~ 29008385 (+)
LOC103024010 LOC106597007 coding upstream 777963 28951471 ~ 28963823 (+)
LOC103022544 pde6g,LOC108432842,LOC107733865,LOC107690252 coding upstream 839282 28901023 ~ 28902504 (+)
LOC103022852 arhgdib,gdir2,LOC108432841,LOC107590585,LOC107685923,LOC107568023,LOC106601960 coding upstream 850857 28828602 ~ 28890929 (+)
clec16a clec16a coding downstream 19245 29761978 ~ 29864484 (+)
pigq pigq,LOC107690265,LOC107733876,LOC107590576 coding downstream 152819 29895552 ~ 29907786 (+)
rab40c rab40c,LOC107567894,LOC107685905,LOC107590575,LOC103366693,LOC107690266 coding downstream 170509 29913242 ~ 29942259 (+)
LOC103042681 xylt1,LOC108439755,LOC107690267,LOC107567884,LOC107729195,LOC107590574,LOC107733871,LOC107686990 coding downstream 363124 30105857 ~ 30219133 (+)
c2h17orf75 cunh17orf75,c2h17orf75,zgc:153240,LOC107690268,LOC107729180,LOC107590573,LOC107567861 coding downstream 526455 30269188 ~ 30278439 (+)
G14506 NA non-coding upstream 11214 29730164 ~ 29730572 (+)
G14502 NA non-coding upstream 62749 29678376 ~ 29679037 (+)
G14488 NA non-coding upstream 128013 29607878 ~ 29613773 (+)
G14483 NA non-coding upstream 318935 29405159 ~ 29422851 (+)
G14477 NA non-coding upstream 340535 29399304 ~ 29401251 (+)
G14619 NA non-coding downstream 295751 30038484 ~ 30038697 (+)
G14625 NA non-coding downstream 331266 30073999 ~ 30074475 (+)
G14629 NA non-coding downstream 479834 30222567 ~ 30234151 (+)
G14642 NA non-coding downstream 536084 30278817 ~ 30279588 (+)
G14647 NA non-coding downstream 539043 30281776 ~ 30338926 (+)
nubp1 nubp1,LOC107690260,LOC107685912 other upstream 21194 29674110 ~ 29720592 (+)
G14480 NA other upstream 343620 29395160 ~ 29398166 (+)
G14444 NA other upstream 612413 29129067 ~ 29129373 (+)
rbfox1 rbfox1 other upstream 1134697 28112046 ~ 28607089 (+)
LOC103031366 LOC105899914 other upstream 1663968 28050129 ~ 28077818 (+)
G14638 rps15a,MGC114789,RPS15A,LOC107686992 other downstream 517944 30260677 ~ 30268382 (+)
LOC103032125 NA other downstream 996311 30739044 ~ 30772153 (+)
LOC103035097 fam193b other downstream 1418334 31161067 ~ 31177592 (+)
smim13 smim13,si:dkey-206d17.5,LOC107559689,LOC107551766,LOC107669968,LOC107734024 other downstream 2298302 32041035 ~ 32045063 (+)
G14985 NA other downstream 2431668 32174401 ~ 32178598 (+)

Expression


Co-expression Network