LOC103031039 (gsg1l,LOC103031039,LOC108436662,LOC107690243,LOC107738642,LOC107685933)


Basic Information

Item Value
gene id LOC103031039
gene name gsg1l,LOC103031039,LOC108436662,LOC107690243,LOC107738642,LOC107685933
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 27703214 ~ 27748186 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007260751.3
CCTCCACCACCCCCAGCCCCGCGCCCGCGGCCCCGCTGAATGAACCCTCCAGCCCCCCCGGCCCCGCTGCAGCATGAAGACCAGTCGGAAGTGCCGCGCGCTGCTGTCGGTGGGCCTGAACCTGCTCGCGCTGCTGCTCTCCACCACCGCCTTCATCACCACCTACTGGTGCCAGGGCACGCAGCGCGTCCCCAAGCCCAACTGCAGCAAGGAGCGCCGCCACAACTGCATCGACTACGGCGTGAACGAGACCGACCCCAGCAAGGTGCACTACAGCTGGGAGACCGGGGACGACCGCTTCCTCTTCCGGCACTTCCACACCGGCATCTGGTACTCCTGCGAGGAGAACATCCACGGAGGAGgTGAGaaatgcaggagttttattgaTCTGGCTCCGGCGTCGGAACGAGGTGTCCTTTGGCTGTCAGTGGTCTCTGAGGTGCTATACATCATGCTCCTGGTGGTTGGCTTCAGTCTAATGTGCTTGGAGCTCTTTCACTCCAGTAACGTGATCGATGGGCTGAAGCTGAACGCCTTCGCCGCAGTCTTCACCGTTCTCTCAGGTCTTCTCGGCATGGTGGCTCACATGATGTACACACAAGTGTTTCAGATCACTGTCAGTCTGGGTCCAGAAGACTGGAGGCCGCACACGTGGGACTATGGCTGGTCCTTCTGCATGGCCTGGGGTTCCTTCACCTGCTGCATGGCAGCGTCCGTTACCACGCTCAACTCCTACACCAAGACGGTGATCGAGTTCCGGCACAAGCGGAAGCTTTTTGAGCAGGGTCTCCGCGAGGAGCAAACCTTTCTAGACCAGGAGGCCTTCCACTACTTCCGCGACCGCTCGGTGCAGTCCATCTCCAGCGCCGTGGACGTATACCCGGGCCACGGGAGCGGACACGGGAGCTCGCACAGCAGCGTGTACGGAGGCAGCCGCGGGAAGCTGCGGGCCCCCTCAGCCTCTGTGGACCTGGGGGACAACACAGAGTCACTGGGGGAGGAACAGTGCTGAGATGGAACACAGGAAAACGCAGAACAGGCCTTGCTTTGGTCTGGAGAATCTGCAGGAAAGCAGCTCAGACATACAATATAATGGACCAAAATTTGAAGGGACTTGCGAGGGACatgctaataaaaaaagtgagtttatatttgaaaatatatagTCAGATATTTTCTGTATAAATGGAAACGAATGGAGTCAAGATGGGATGATGAAATTTCTTCTAAATTGTGGCAGGATATCAAGTGATGAATGTACTGTAATGAAATGGACATTTATGTGACATTATGGCGAGACATGGTGAGACATGCTTCGGCATCAGCAgacggagtctgagagagcacagttgtccatGCTATCTCTGGGTGGGGGGgaaatggcgctctctctctcatcattcCTTCCAGTGTGACTCTGATTGGCACAAGCCTCTATTGGCTGATGAATCAAAGCTGGGGATCCGGCactttcctttattttagtTCTATATTGGCAACGGTTTAAAGTGGTGAAGAGGTGGAggcctacactgaaaaaaaaaatgattcgtaaaatttacttgaaaaaagtttcacaactttata

Function

symbol description
gsg1l Predicted to be located in membrane and synapse. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Is expressed in midbrain hindbrain boundary. Orthologous to human GSG1L (GSG1 like).

NR:

description
germ cell-specific gene 1-like protein

GO:

id name namespace
GO:0045202 synapse cellular_component
GO:0005886 plasma membrane cellular_component
GO:0030054 cell junction cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007260751.3 True 1587 mRNA 0.54 5 27703214 27748186

Neighbor

gene id symbol gene type direction distance location
c2h16orf89 cunh16orf89 coding upstream 100071 27591585 ~ 27603143 (+)
eef2kmt eef2kmt coding upstream 125154 27573552 ~ 27578060 (+)
LOC111194302 NA coding upstream 591146 27104032 ~ 27112068 (+)
LOC107197223 NA coding upstream 599360 27060145 ~ 27103854 (+)
pgam5 pgam5 coding upstream 738524 26959384 ~ 26964690 (+)
fbxl16 fbxl16,LOC107685932,LOC107738613,LOC107568165,LOC107568127,LOC107690242 coding downstream 51230 27799416 ~ 27842056 (+)
mettl22 mettl22 coding downstream 917026 28665212 ~ 28694928 (+)
abat abat,LOC107690246,LOC107738621,LOC107685926 coding downstream 949236 28697422 ~ 28748984 (+)
dnase1 dnase1l2 coding downstream 1065932 28814118 ~ 28821841 (+)
LOC103022852 arhgdib,gdir2,LOC108432841,LOC107590585,LOC107685923,LOC107568023,LOC106601960 coding downstream 1080416 28828602 ~ 28890929 (+)
G14172 NA non-coding upstream 23522 27679425 ~ 27679692 (+)
G14096 NA non-coding upstream 60092 27586935 ~ 27643122 (+)
G14089 NA non-coding upstream 83400 27566514 ~ 27619814 (+)
G14084 NA non-coding upstream 109777 27505915 ~ 27593437 (+)
G14080 NA non-coding upstream 257892 27445011 ~ 27445322 (+)
G14179 NA non-coding downstream 64776 27812962 ~ 27890032 (+)
G14198 NA non-coding downstream 256098 28004284 ~ 28094960 (+)
G14217 NA non-coding downstream 452975 28201161 ~ 28206645 (+)
G14245 NA non-coding downstream 731605 28479791 ~ 28480303 (+)
G14247 NA non-coding downstream 752293 28500479 ~ 28502147 (+)
G14047 NA other upstream 662685 27009548 ~ 27040529 (+)
LOC103023549 gpr171 other upstream 1908130 25788584 ~ 25795084 (+)
mfrp mfrp other upstream 2029978 25660898 ~ 25673236 (+)
LOC103045399 LOC108426937,LOC108277812 other upstream 2060471 25561633 ~ 25642743 (+)
LOC103040166 LOC103040166,LOC108426893 other upstream 2363779 25246996 ~ 25339435 (+)
LOC103031366 LOC105899914 other downstream 301943 28050129 ~ 28077818 (+)
rbfox1 rbfox1 other downstream 363860 28112046 ~ 28607089 (+)
G14444 NA other downstream 1380881 29129067 ~ 29129373 (+)
G14480 NA other downstream 1646974 29395160 ~ 29398166 (+)
nubp1 nubp1,LOC107690260,LOC107685912 other downstream 1925924 29674110 ~ 29720592 (+)

Expression


Co-expression Network