RNA id: TU18811


Basic Information

Item Value
RNA id TU18811
length 2177
lncRNA type inter_gene
GC content 0.40
exon number 3
gene id G14018
representative True

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 26937907 ~ 26940146 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CCTGGATGACAACTTAGTGCATTAGCAACACAAATCAGAGCCAACAAGAATTAAAAAGTCAACAGAATTTGGCTAATCACTGCAAAAAATCTAGTAAACGTTTAGTTTTACCTCAGAGTTACAAAACAttgaaagctaaagctaaaacccTTCAATTAGCATCCTGACCCCTCACTGCTAACCCTGTTTAACCTACTGTTAACCTGGAAAACCGACGACAGTAGAGACAAAATGCTAATTGGCTACATGCTAACTATTATTTTTAGCTATGCTAATGGCGTTTTTGTATAAGTAGAGCGGATCTAACAAGtcagtgtttttacacctgtgtAACAGATACAGGCAAGTAAAAAGGGGTTTCCTCCACAGTTTCCACTTCCCCGTTAGCACTTAGCTGCAGCGCTACAGTGTGCGGCAGTGTGGGGGTGGACTGTGTCTCTGCACGTAGGCCTGTGTTTGGGTTCTTTCCGTGCTTGTGGTGCCGAACGTGTGCATCAGTTGTCAGTATGCAAAGAtttaaaaagatgcaaagaTTGAGCTATGCTAACGCTACCGCAGTTTACgcaaacaaacagataaacaaaaccCAGCCTGCGCTGAATCATTCCGTGTCTACATTTCCCCAAAAACGAGCTGGAAATCCCGCTTATCCAGCGCTGGAACTCTGCAAATTTGCATACATAGTGTGTACTGTTCTTTGGTGTGTTTTCTAAATATTTACAAGCAGATGCTTCACAGGTTTCACATAAAATCAGCTGAACATTCAGTCTGCTGTAGAAATCATACATCAGAGAAATTAGCCTGATGTTACTCAGTCGTTCATGCTTACAGAGTTCTGAATCTTTCTATAGAAAATACCATTTGTGTGGCCTGAGCTTTTATATATACTAGTCTAGAGCATTTCAAAAATTCAGATCTATCTACCAGATGTTTCtatttgtaatgtaaagttataaATGATGcttttttatacatacatatacagctctggaaaaaattaaaagaccacttcagtttctgaatcagtttctctgattttgctatttataagtttatgtttCTCCcacattcaaaataaaaatattgtcatttatttgcagaaaatgagaaatggctgaaatgactgaaaaaagctgcagagctttcagatctcaaataatgcaaaaaaaaaaaaacaagttcatattcataaagttttaagagttcagaaatcaatatctggtaaaaaaaaaaataaccctggttttaaatcacagtttttttttgcatcttggcatcatgttctcctccaccagtcttacacactgcttttggataactttatcatTTCAATTCACCATtctttaagtgctctcttattttgttccagagctgtatctatatttaacagtgtaaacagtgttcattaaattatagttttaaaCAGACTCCTGTGTGAGTAGTCTCAGTGTTTTTGGTGGTTGACTCAAGAGTTTAGTGCAGGTTTGGCTCACAGTGATTCTCAGCAGGATCATTCAGACAGTGATTCAGtacatgaatgtgtgtgtgtgtgtgtgtgtgggtgtgtgtgttagagtgacGATAAGTGTCCTGAGTAAACTGTATCCTTCAACAGCCCCATGAGTCTCTTATGTTCCAGGCAGTGAGTTAGCTTTAGCTGTTAGCGACATTagcaaaaatgtgtgtgtgtttatgtgcaaaAGTCTTAGACAACTAAGCAAACTAGACTTTGGATGGGAACTGGGAATatgctcggcacagcgcctgtgttaccgagatagtgatgaacgtctgactgttggcgtctgtctagattgtattcagtcagtggagctaaaactccagaaatgtacctgaacacacctcatttccagagcaccacgcccatcagtgcagatatattcagaagatctgctgctgtttaaaccaggcaatgagctatcttacacctcaggGTGCTGGGTATAAGACCTGATTTGGTGAATAAGACTTttccacagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgctcagaaGCGGGCGATCTCCCTCAGGGTGGGCGGGGCTCCGCGGGAGAGGTTGAGCTGGTGCAGTCCTGTATTAAAACTGGCGCAGAGTAAACTGCTGGAGTCACAAGGCGCCAATGATACCAACGGACCCGACCCGTCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU18809 lncRNA upstream 6885 26929577 ~ 26931022 (+) True G14016
TU18794 lncRNA upstream 47815 26889690 ~ 26890092 (+) True G14002
TU18677 lncRNA upstream 88967 26769291 ~ 26848940 (+) True G13899
TU18688 lncRNA upstream 114634 26819691 ~ 26823273 (+) True G13908
TU18682 lncRNA upstream 155356 26781896 ~ 26782551 (+) True G13904
TU18805 lncRNA downstream 31078 26971224 ~ 26972840 (+) True G14012
TU18806 lncRNA downstream 38455 26978601 ~ 26981133 (+) True G14013
TU18828 lncRNA downstream 43841 26983987 ~ 27009050 (+) True G14033
TU18872 lncRNA downstream 308147 27248293 ~ 27300283 (+) True G14074
TU18878 lncRNA downstream 504865 27445011 ~ 27445322 (+) True G14080
XM_007237662.3 mRNA upstream 229135 26701559 ~ 26708772 (+) True LOC103037665
XM_022675689.1 mRNA upstream 262892 26497552 ~ 26675015 (+) True dscaml1
XM_022675694.1 mRNA upstream 262892 26497552 ~ 26675015 (+) False dscaml1
XM_022675691.1 mRNA upstream 262892 26497553 ~ 26675015 (+) False dscaml1
XM_022675621.1 mRNA upstream 1108840 25816743 ~ 25829067 (+) True mindy4b
XM_022675737.1 mRNA downstream 19238 26959384 ~ 26964690 (+) True pgam5
XM_022675740.1 mRNA downstream 19238 26959384 ~ 26964690 (+) False pgam5
XM_022677973.1 mRNA downstream 119999 27060145 ~ 27103854 (+) True LOC107197223
XM_022677978.1 mRNA downstream 163886 27104032 ~ 27112068 (+) True LOC111194302
XM_007260749.3 mRNA downstream 633406 27573552 ~ 27578060 (+) True eef2kmt
TU18257 other upstream 1264718 25668748 ~ 25673189 (+) False mfrp
TU18064 other upstream 1881804 25052513 ~ 25056103 (+) True G13445
TU17784 other upstream 2080885 24855933 ~ 24857022 (+) True G13237
TU17745 other upstream 2220681 24714351 ~ 24717226 (+) False ccdc9
TU18843 other downstream 69402 27009548 ~ 27040529 (+) True G14047
TU19049 other downstream 1109983 28050129 ~ 28056900 (+) False LOC103031366
TU19373 other downstream 2188921 29129067 ~ 29129373 (+) True G14444
TU19421 other downstream 2455014 29395160 ~ 29398166 (+) True G14480
TU19448 other downstream 2734028 29674174 ~ 29689149 (+) False nubp1

Expression Profile