RNA id: TU18828


Basic Information

Item Value
RNA id TU18828
length 1251
lncRNA type inter_gene
GC content 0.45
exon number 2
gene id G14033
representative True

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 26983987 ~ 27009050 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

atttttttacactcgcTGGTTAGCAAACATGCTAACTGCCATACAAACAGTAACAGTATTGAGCAGGCGCAGGATAACTGCTTATTAAACATGACCGAAGAGgggaaaataaacagaataaacccAGAAACAGTAACAAAATGAGCGTTTTAGTCCCTTTGCTGAGAATAGTGGAATCCACATTATTGTACAGGAGGGCCAGTGCACAGTTTAAGAGGTTTTTGCGCAATTTAACACAACTGATGCCATTCATTAAGGCCTAATAATGAACTTAATGAGCTTAATGAGCTAAAATACAGTGGTATGGCTGTTTAGCGCTGAATATGGATTGAGTTGAGTAGAAATATGAATAAGTATTATCCCTTTAAATAGTTTCAAATTAAAGCTCATTAATCACAgccataaaatattatttaacctTATTAATTACTTCAGCATTTTTCAATGTAGCCTTGATGTGCTGTATTTTAAGCACACAGCTGATTAGCACAATTATCTTATAGACACATTAATTTGACGCATCTGTCCATTGAGTtctattgtaaatgtatttagaGTCAGATATTCTCCGttattttctattaaaacacactgaaattccCCTTTAAATTAGCTTATTCTAAACACATGATAACCTCAAGCTCGGGCCTAAATggataaacagtaaaacagtcaGTTTCTGAGGGAAATCTGTGTAttgctttaaaaacaaatacattaaatcaAGCTTTCTGAACACAACCGGTCGTGTGTTAAGGCTGCGAACGATTAAAACCAGTCTGTAGAAAGTGTCCGTCCAAGCTCAACCccaaaaaacattacaaaaaaaacaagaaattaaaGCAGGCTTTGTCAGAATCTCATTCCAAAGATTAGCAACAATATTTTACATCTTTCCCATTCGCGCTCAGTTCATCTCTCGCCTCGTCAAATTGTGCAACGTCATTCGACacagtttttatatattataaatatattacactGAACCGCAACAAGCTATTATACACACTttccccacacacactctttacacaACGACCGATAAACTCATTCAGACAGTTCAAACAGCGAAACAGATCAACCGCACATGCTAACGTTGCTAACTGTGCGTGAACAGAAGCCAGCAGCCTCTACTTAAAAGCATTTACGATGCTAATCTGTGGCTATTCGTGGCTTTTATTCACcgttattattagcattagcatcatccactgatataatatatatatatatatatatatttatatattt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU18806 lncRNA upstream 2854 26978601 ~ 26981133 (+) True G14013
TU18805 lncRNA upstream 11147 26971224 ~ 26972840 (+) True G14012
TU18811 lncRNA upstream 43841 26937907 ~ 26940146 (+) True G14018
TU18809 lncRNA upstream 52965 26929577 ~ 26931022 (+) True G14016
TU18794 lncRNA upstream 93895 26889690 ~ 26890092 (+) True G14002
TU18872 lncRNA downstream 239243 27248293 ~ 27300283 (+) True G14074
TU18878 lncRNA downstream 435961 27445011 ~ 27445322 (+) True G14080
TU18883 lncRNA downstream 496865 27505915 ~ 27593437 (+) True G14084
TU18891 lncRNA downstream 557464 27566514 ~ 27619814 (+) True G14089
TU18898 lncRNA downstream 577885 27586935 ~ 27643122 (+) True G14096
XM_022675737.1 mRNA upstream 19297 26959384 ~ 26964690 (+) True pgam5
XM_022675740.1 mRNA upstream 19297 26959384 ~ 26964690 (+) False pgam5
XM_007237662.3 mRNA upstream 275215 26701559 ~ 26708772 (+) True LOC103037665
XM_022675694.1 mRNA upstream 308972 26497552 ~ 26675015 (+) False dscaml1
XM_022677973.1 mRNA downstream 51095 27060145 ~ 27103854 (+) True LOC107197223
XM_022677978.1 mRNA downstream 94982 27104032 ~ 27112068 (+) True LOC111194302
XM_007260749.3 mRNA downstream 564502 27573552 ~ 27578060 (+) True eef2kmt
XM_007260750.3 mRNA downstream 564505 27573555 ~ 27578060 (+) False eef2kmt
XM_022675797.1 mRNA downstream 582535 27591585 ~ 27603143 (+) True c2h16orf89
TU18257 other upstream 1310798 25668748 ~ 25673189 (+) False mfrp
TU18064 other upstream 1927884 25052513 ~ 25056103 (+) True G13445
TU17784 other upstream 2126965 24855933 ~ 24857022 (+) True G13237
TU17745 other upstream 2266761 24714351 ~ 24717226 (+) False ccdc9
TU18843 other downstream 498 27009548 ~ 27040529 (+) True G14047
TU19049 other downstream 1041079 28050129 ~ 28056900 (+) False LOC103031366
TU19373 other downstream 2120017 29129067 ~ 29129373 (+) True G14444
TU19421 other downstream 2386110 29395160 ~ 29398166 (+) True G14480
TU19448 other downstream 2665124 29674174 ~ 29689149 (+) False nubp1

Expression Profile