RNA id: TU18891


Basic Information

Item Value
RNA id TU18891
length 219
lncRNA type read_through
GC content 0.46
exon number 2
gene id G14089
representative True

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 27566514 ~ 27619814 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tgtctctctgacatatcctcatggatgagggagcatcaccttcaattaaatctctcaaagactgaacttctggTTATAAGGCAGCGCGTTCGGGACACGCTCTGGAGTCAGCATACGTCATCACGTCTAGCGCGCTGTGCCCGTGAgctgtttataaataactaaagtTAATGATCACTTACCTCGGGATAAATCTCAATGCAGCGGCAgctatttctc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU18878 lncRNA upstream 121192 27445011 ~ 27445322 (+) True G14080
TU18872 lncRNA upstream 266231 27248293 ~ 27300283 (+) True G14074
TU18828 lncRNA upstream 557464 26983987 ~ 27009050 (+) True G14033
TU18806 lncRNA upstream 585381 26978601 ~ 26981133 (+) True G14013
TU18805 lncRNA upstream 593674 26971224 ~ 26972840 (+) True G14012
TU19010 lncRNA downstream 59611 27679425 ~ 27679692 (+) True G14172
TU19019 lncRNA downstream 193148 27812962 ~ 27848773 (+) False G14179
TU19017 lncRNA downstream 226583 27846397 ~ 27848773 (+) True G14179
TU19018 lncRNA downstream 226583 27846397 ~ 27890032 (+) False G14179
TU19045 lncRNA downstream 384470 28004284 ~ 28094960 (+) True G14198
XM_022677978.1 mRNA upstream 454446 27104032 ~ 27112068 (+) True LOC111194302
XM_022677973.1 mRNA upstream 462660 27060145 ~ 27103854 (+) True LOC107197223
XM_022675737.1 mRNA upstream 601824 26959384 ~ 26964690 (+) True pgam5
XM_022675740.1 mRNA upstream 601824 26959384 ~ 26964690 (+) False pgam5
XM_007237662.3 mRNA upstream 857742 26701559 ~ 26708772 (+) True LOC103037665
XM_007260751.3 mRNA downstream 83400 27703214 ~ 27748186 (+) True LOC103031039
XM_022675820.1 mRNA downstream 179602 27799416 ~ 27842056 (+) True fbxl16
XM_022675836.1 mRNA downstream 430415 28050229 ~ 28076215 (+) False LOC103031366
XM_022675845.1 mRNA downstream 430415 28050229 ~ 28075953 (+) False LOC103031366
XM_022675840.1 mRNA downstream 430415 28050229 ~ 28075952 (+) False LOC103031366
TU18843 other upstream 525985 27009548 ~ 27040529 (+) True G14047
TU18257 other upstream 1893325 25668748 ~ 25673189 (+) False mfrp
TU18064 other upstream 2510411 25052513 ~ 25056103 (+) True G13445
TU17784 other upstream 2709492 24855933 ~ 24857022 (+) True G13237
TU17747 other upstream 2849288 24715890 ~ 24717226 (+) False ccdc9
TU19049 other downstream 430315 28050129 ~ 28056900 (+) False LOC103031366
TU19373 other downstream 1509253 29129067 ~ 29129373 (+) True G14444
TU19421 other downstream 1775346 29395160 ~ 29398166 (+) True G14480
TU19448 other downstream 2054360 29674174 ~ 29689149 (+) False nubp1
TU19455 other downstream 2113491 29733305 ~ 29742723 (+) True G14505

Expression Profile