RNA id: TU19017


Basic Information

Item Value
RNA id TU19017
length 2331
lncRNA type inter_gene
GC content 0.33
exon number 2
gene id G14179
representative True

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 27812962 ~ 27890032 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ttcaGTCATTCCTTAGAGGTCAGAGAagtcttaaccctttcagaccctgcatccgtTACAacagacatcatgtattttctttatttttaaattatttgatgCACATAATACTATttaagagctgttgtccatcagaatagaccaggAACCAGCCGATAAACATGAATTGATAAACATTGAACAGTAGCTtggccccacccactgcactcgaaaaacagtagtactagagccatttaggaaaagtaacatttttactaatttaatttgATCTAGAACACTTTTAATCaagttttttactgtttagggatgaaaataggaaataaaaatgtcaatatgaaatattaaatattacacacaggcctCCAATTAAATGGAAATtaagttaattggatttatttgctatatatatatattttattgtagaatattagagtcttcttttctgtgattaaagacagaaaacagcattcttgctctttttgttcgatcactggagataatttaggtctgaaagggttaatgctTCCTACTGAAAACCCTCTTCAAAATAAAGGTCCTGAAAAGAGCTTCTTTGCAGCGATgtcatagaagaaccacttttggttccaaTAAGAACTTTCTAAATATTAAGGGAGAATTGATTTTTCAAAATGTCTGCATATTACGATCACTAAAAAAGTAGGGCTGGACATATAaaggaaaaatattaaaatattaatatagaaacaacaaacagatttttagaaCCAGTTACAGTTTTTAAGTACTTAAGCTTTTAGGTACTGGGGATAAATAACCACAATATGCTCCAAAAAAGTGTATTGTGTAGCCTCATAACAAAACTAAGTGTATTACAATCCCTAACTGAATGCATTCAACTTTTGTATTGATTTAGTGGAAAATTGTAAAgaaatgttcttaaaaaaatttaacagCAGTGGTAAACAAGGGGTTTAAATGTCTACAACAGAAATACGGCCGTAGTATTAATTAAGAAAACATCTCCTGCCTATTGAGTGCttatatgtaatgtatgttttaacaataaaattatGGCAAATTTGACAAAAAGTTAACAAAACAGACAATTTAACAACCATTTGCATGGACCTTTCTACCTTTCTGAATGTAATGATTCCCCCAAGCAATGATTTACAGAGTCCAAGCACATATTAGCCCAGTTAGGCTGTGTTCAGTTACAAACTATATGTAACTGTGAGATGTAACAGCATCTGACATCATCATAAATAAGTGCATTTGTgcatatttaatgtaataacacctttttttttgtaacgtTGCTTCTAATGTAGGCCTTATTCAATGCATCAGACATCTGATTTCTTTAATTCCCATCACCAGTAACTGTAATTTTAGGTTTATCAGGAAGTTGTATTTCACACTAAACCAATCAAATCTAATGTTTTGAGTAATATTTAAAAGAGTCTGACTTTGTGTATATCGAGTCGATTACGCCATGCAGGAATTTTGAAAGATTGTtggatttttaaagattttcctTTCAGGCTTTCCTTGAATTGTACATCCAATCCGAGAAACACTTGGAAACCTTGATTTTTAACAAAGTGCAGGTCACAGGTTTCTTACGTGCACATTTAGTGtgatttctttcattttgttGCGGTTTTAGCAGTTTAAGATCcgtatttatttgcatttgctACGTGTTTGTTGGGCGGCGGGGGGTTAATTTATTGAGCTGGtgcacatatttatttatttattaactcgAAGAGGACTGTGTCATGTTGTTTTGAGATGTTTATTTGATTGCGATCAAATAGGAAAGAGCAGGGAGAACACGGGAGTCGCTTCCGAACGGCAGGGTTTGACCgtcattgtcctgtttttttttttttgtttagtttttttttcttggccgGCAGATGAATTGGCCCgagctgtttgtttgttttctgccgAGACTGCGGAGATCTTTGTCACGAACGGCGAGCCTGCCCACTGCTGGTTGGCACAACTCTGGTGATGTTACAGCtggcagagaaataaaagagtaaaagggTTTTTTGGCCTCAGAGAACCGAAGCTGTGCTGGCCCGACTCGCCCTCGTGTCCGTGCTCCTCCGCTGGGGGTGTGAACCTCTGATTCGAGTGGATTGTGATTGAGTGCGTTATGGAATCTCACATTTCACCAAGCTTCAATTTTATTTGTACAATTtggaaatatttataaaaatacactgaatataCAAATGTACATGAAGGGACTGTTTCCACAGCCGAGAAATAAGACAATAAAAATGACATACTGAAAAagattttcattctttttttttattggttaattTA

Function

GO:

id name namespace
GO:0015672 monovalent inorganic cation transport biological_process
GO:0030001 metal ion transport biological_process
GO:0006811 ion transport biological_process

KEGG:

id description
ko04024 cAMP signaling pathway
ko04727 GABAergic synapse
ko05032 Morphine addiction
ko05033 Nicotine addiction

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU19010 lncRNA upstream 166705 27679425 ~ 27679692 (+) True G14172
TU18898 lncRNA upstream 203275 27586935 ~ 27643122 (+) True G14096
TU18891 lncRNA upstream 226583 27566514 ~ 27619814 (+) True G14089
TU18883 lncRNA upstream 252960 27505915 ~ 27593437 (+) True G14084
TU18878 lncRNA upstream 401075 27445011 ~ 27445322 (+) True G14080
TU19045 lncRNA downstream 155511 28004284 ~ 28094960 (+) True G14198
TU19040 lncRNA downstream 209208 28057981 ~ 28077818 (+) True LOC103031366
TU19064 lncRNA downstream 352388 28201161 ~ 28206645 (+) True G14217
TU19093 lncRNA downstream 631018 28479791 ~ 28480303 (+) True G14245
TU19096 lncRNA downstream 651706 28500479 ~ 28502147 (+) True G14247
XM_022675820.1 mRNA upstream 4341 27799416 ~ 27842056 (+) True fbxl16
XM_007260751.3 mRNA upstream 98211 27703214 ~ 27748186 (+) True LOC103031039
XM_022675797.1 mRNA upstream 243254 27591585 ~ 27603143 (+) True c2h16orf89
XM_007260749.3 mRNA upstream 268337 27573552 ~ 27578060 (+) True eef2kmt
XM_007260750.3 mRNA upstream 268337 27573555 ~ 27578060 (+) False eef2kmt
XM_022675836.1 mRNA downstream 201456 28050229 ~ 28076215 (+) False LOC103031366
XM_022675845.1 mRNA downstream 201456 28050229 ~ 28075953 (+) False LOC103031366
XM_022675840.1 mRNA downstream 201456 28050229 ~ 28075952 (+) False LOC103031366
XM_022677983.1 mRNA downstream 263273 28112046 ~ 28607083 (+) True rbfox1
XM_015604859.2 mRNA downstream 816439 28665212 ~ 28694928 (+) False mettl22
TU18843 other upstream 805868 27009548 ~ 27040529 (+) True G14047
TU18257 other upstream 2173208 25668748 ~ 25673189 (+) False mfrp
TU18064 other upstream 2790294 25052513 ~ 25056103 (+) True G13445
TU17784 other upstream 2989375 24855933 ~ 24857022 (+) True G13237
TU17747 other upstream 3129171 24715890 ~ 24717226 (+) False ccdc9
TU19049 other downstream 201356 28050129 ~ 28056900 (+) False LOC103031366
TU19373 other downstream 1280294 29129067 ~ 29129373 (+) True G14444
TU19421 other downstream 1546387 29395160 ~ 29398166 (+) True G14480
TU19448 other downstream 1825401 29674174 ~ 29689149 (+) False nubp1
TU19455 other downstream 1884532 29733305 ~ 29742723 (+) True G14505

Expression Profile