RNA id: XM_015604859.2


Basic Information

Item Value
RNA id XM_015604859.2
length 2097
RNA type mRNA
GC content 0.44
exon number 11
gene id mettl22
representative False

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 28665212 ~ 28694928 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CACAGCAGGTGCAGGAGGAACCAGGACAGGCGGAACTATTGTGCAGAGCGTCATGACTCACACGGAACAGTGGGCGGAGAAAGGACATGCAGGGGTGGCCATGGACCAGGTCACCTTCCAGAGTGACACAGTGCTCTCAGATGTGCACATTTTGCTGCCAAATGTTCGTCACCTCATGGTTCGACTCAATAGCGTAGGACAGCCAGtCTTTGTGTCGAAATTTAGGATTCTGCGCGAAAAGGAGCAGGAGGAAGTTCAGGAATCTGAGAAAAGCAGTTTCCTGGATGACGATGGAGACCTAGATGTGGTAAGGCAGCCCAAAAACTTGGCGTGTGATCGCGAGAAGGTTCACCCCGTCATTCTTAGCCAGGGTGGAGGGACCACCAgtgatgaagaggaagatgaggGAGATGAGGAAGAGTGTGCAAAGGACATCATCAAGATCGAGCACACGATGGCTACGCCGCTGGATGATGTCGGAAAGCAAATCTGGCGGGGAGCGTTCCTGCTGTCTGATTTCATCCTCTCGCACCCGGACGTTTTTAGAGAAGCGACGGTTTTGGAGCTGGGAGCAGGAACCGGCCTAACGAGCATCATCATGGCAAGCGTCGCCAAAAAGGTGTACTGCACAGATGTTGGTGAAGACCTGCTCAACATGTGTCAGAGAAATGTGTCTTTGAACAGCCATTATATACAATCTGCAGGTGAGCGAGGTGTGAAGGTGCGGCAGCTGGACTGGACGGCTGATGATTTCCTCACAGACTCCGACGCAGAGTTCAGCTGGAGCGAGGAGGAGGTGGCCGACCTGCACGACAACACCACGGTCGTGATGGCAGCAGACGTGTGTTATGATGATGACCTCACTGATGCGCTCCTCCGAACTCTGTACCGAATCACCAGCAACCTGCGGAAGCCGAGCACCGCCTACTTCAGCATAGAGAAACGACTGAACTTCACTATTCGCCATATGGATACGAGCTGTGAGGCGTACGATCACTTCCGGCACTGTCTGAAGCAGCTGGGAGAAATGAGTGATGGGAGGATGAAGTTTACTGTGTCTCCAGTGTCCTGCTCCTTCCCCCAGTTCCTCCAGTATGAGCGAGTCGACCAGCTGGAGCTTTGGAAGGTGTCTGCCTCATCCCTTTAATCCGAATCCCTCTTGGCCTCCTCACTCAGTCAAGAGCTTTTTTCTGAAAGGATTGCAGAATCCCAGACTACAGCTCTCAGGAGAAAAACCCTAAAGCTGACATTCAGCCGCATGTAGCTGCTCTATAACAGCTGTAAAGGTCTAGACATAGAGAGGAAAATCCTTAATGTGAACAGGTTTAGGTTTTTTAAGTATACTATAATGGTCAGTTGTATGTTCTGGTGCTTTTAATTCAGTATATAGGGCTTGTGATTGATTAACAGAACCTTTTCTACATAAATGAATCTTTTTTAATAGGAAAATGCTTTTATAAGCCGTgttattagttttaataatgaGAGCACTGGGTATATGAAGAATGTGTTGGTGGAGATTGTTGGTTTTATTTCAGATTGTGATTTGATTCCAGAATGTTGCTGTTTAACAGAACCTTGTATCTCTAAAATGGGATTTTTTTAGGAAAAGGGAAAAACAACATGCCTAATTTAATATCAGTTAATGTAAGAAACTTTATTTGTATTCATTCAGaaccatttctattggtccattcattgcAGAATGTTCTGGCATTTCCAAATGTTGTAAAGAAAACACAgaggtatttatttaaaaatgagtgtgatttttaattaatcaactgattaaattattttctttttatttatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggttgtaagTGGGCTGTGGATGTTTCTCTTTATAGACACTAGAGGGTGCAGTAATCATTTGatataaaaatactaaagaATAGACAATCCTAATTGCAGactgtgttaaaaataaattcataaatatgTGAGGAAGACTTAGTTGCAAAAAAAGCAAAGTTGCGCTTTTATAATGTGTGAATATTTTTAGCCTCTTCTCACCAAACAGAATTTTAATAGAATTTGTGAAATAAACAGGTTTGAAAGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU19217 lncRNA upstream 44092 28620714 ~ 28621120 (+) True G14338
TU19039 lncRNA upstream 58123 28598522 ~ 28607089 (+) False rbfox1
TU19032 lncRNA upstream 59320 28564706 ~ 28605892 (+) False rbfox1
TU19033 lncRNA upstream 59320 28564706 ~ 28605892 (+) False rbfox1
TU19096 lncRNA upstream 163065 28500479 ~ 28502147 (+) True G14247
TU19248 lncRNA downstream 3336 28698264 ~ 28699214 (+) True G14352
TU19237 lncRNA downstream 12368 28707296 ~ 28753191 (+) False G14346
TU19238 lncRNA downstream 24931 28719859 ~ 28777294 (+) False G14346
TU19250 lncRNA downstream 28464 28723392 ~ 28724706 (+) True G14353
TU19235 lncRNA downstream 48746 28743674 ~ 28753133 (+) False G14346
XM_022677983.1 mRNA upstream 58129 28112046 ~ 28607083 (+) True rbfox1
XM_022675836.1 mRNA upstream 588997 28050229 ~ 28076215 (+) False LOC103031366
XM_022675845.1 mRNA upstream 589259 28050229 ~ 28075953 (+) False LOC103031366
XM_022675840.1 mRNA upstream 589260 28050229 ~ 28075952 (+) False LOC103031366
XM_022675820.1 mRNA upstream 823156 27799416 ~ 27842056 (+) True fbxl16
XM_022675868.1 mRNA downstream 2494 28697422 ~ 28748984 (+) True abat
XM_007245547.3 mRNA downstream 119190 28814118 ~ 28821841 (+) True dnase1
XM_022675892.1 mRNA downstream 119190 28814118 ~ 28820601 (+) False dnase1
XM_022675891.1 mRNA downstream 119190 28814118 ~ 28819528 (+) False dnase1
XM_022675889.1 mRNA downstream 120315 28815243 ~ 28821841 (+) False dnase1
TU19049 other upstream 608312 28050129 ~ 28056900 (+) False LOC103031366
TU18843 other upstream 1624683 27009548 ~ 27040529 (+) True G14047
TU18257 other upstream 2992023 25668748 ~ 25673189 (+) False mfrp
TU18064 other upstream 3609109 25052513 ~ 25056103 (+) True G13445
TU17784 other upstream 3808190 24855933 ~ 24857022 (+) True G13237
TU19373 other downstream 434139 29129067 ~ 29129373 (+) True G14444
TU19421 other downstream 700232 29395160 ~ 29398166 (+) True G14480
TU19448 other downstream 979246 29674174 ~ 29689149 (+) False nubp1
TU19455 other downstream 1038377 29733305 ~ 29742723 (+) True G14505
TU19643 other downstream 1565749 30260677 ~ 30268382 (+) False G14638

Expression Profile