RNA id: XM_022675868.1


Basic Information

Item Value
RNA id XM_022675868.1
length 2125
RNA type mRNA
GC content 0.54
exon number 16
gene id abat
representative True

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 28697422 ~ 28748984 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GTCGATTCCGCCGCTTTTCCCCGCAGCTTTCCCCCGCAGCTTTCCCGCACAGAGCCGCGGAGCTTCTGCACGGACCGGCGCACAGAGGCGAGGCGAGGTAGTGTGAAAGGCAGGAGCCGTGGGCTGTCTTtctccctgtttctctctgtctttatctctttccctctttgAAAACTGCACATGGCGTCGTCCCTCCTCAGCCGTCAGCTGACCCGCTCCCTGCGGCCCAACCTGCACCTCGCAGCTCCAGGTTGCAGGTATGTCAGCAAAACGGCTGCGAAGCCGGTGTCCGAGTTTGAATATGATGCCCCCTCCATGAAGACCCCTGTTCCCGGGCCAAAGTCAAAGgAGCTAACAAGACAGCTTGGAGAGATTCAGAATGTTGGCGCGGTAAATTTCTTCTGCAACTACGAGGAGAGCCGGGGAAATTACCTGGTGGATGCTGATGGGAATCGAATGCTGGATCTGTACACTCAGATCTCCTCCGTCCCCATTGGTTACAACCATCCCGCTCTGATGAAGGCCGTCACCAATCCCATCCATCTGAGTGCGTTTGTCAATCGGCCAGCTCTTGGGATTCTGCCACCGGAAAACTTCCCGGAGAAGCTGGTGGAGAGTCTTCTGTCGATCGCTCCCACTGGAATGACCCGGGTGCAGACCATGGCTTGTGGCTCCTGCTCCAACGAGAACGCCTACAAGGCCATGTTCATCTGGTACAAAAATAAAGAGAGGGGAACCAACAGCCCTTCAGCAGATGAAGTCAGCTCCTGCATGATCAACCAGGGTCCTGGTTGTCCAGATTTGAGCATCCTGTCCTTTATGGGGGGCTTCCATGGCAGAACTTTGGGATGTTTGGCGACGACTCATTCGAAAGTCATCCACAAGCTGGACATTCCCTCCTTCGACTGGCCCATCGCCTCCTTCCCCAGGCTGCAGTATCCTCTGGAGGAGTTTGTCAGAGAAAACGCGCAGGAGGAGGCGCGCTGCCTGGAGGAGGTGGAGGATTTGATAGTGAAGTGGAGGCAGAAGGGAAAGCCGGTGGCCGGCATCGTTGTGGAGCCCATCCAGGCGGAGGGAGGAGACAACCACGCCTCACCAGACTTCTTCATCAAATTACGCAACATCGCTCGCAAGCACGGATGTGCTTTCCACGTGGATGAAGTTCAGACAGGCGGTGGAACCACGGGCAAGTTCTGGGCTCACGAGCACTGGGGCACGGACGACCCGGCCGACATCGTCTCCTTCAGCAAGAAAATGCTGACGGGAGGATACTACCACAAAGACGAGCTGGTGCCAGACAAGGGCTACAGAATCTTTAACACATGGATGGGAGACCCCTCTAAGAACGTGTTCCTGACGGAGGTCCTGAACGTGATCAGGAGAGAGAACCTTCTGGATGAGGTGACTCGCTCAGGGAAGGTTCTGCTGCAGGGACTGTACGAACTACAGGCTCAGTATCCTCACATCCTGAGTCGGGCTCGCGGCCAGGGAACCTTCTGTGCTGTAGATGCCCGTGACGATGTGACCCGGGACAATCTCCTGCTCAAAACCAGAGACAAGGGTGTTCTCCTGGGCGGCTGTGGAGATCGGTCCATCCGCTTCCGCCCGGCTCTGGTCTTCAAGGAGTACCACGCTCACCAGTTCCTCAACATCTTCAACGACGTGCTGTCTGAATACAAATAAAGTCCCGGAGGCCCAGCCGGCTGACCACAAAGAACAAGCACAAGGGTCCAAGCCCAGATGAGGGGTTCTTCTTTTCTCAACACATCACAGAGCAATCAGTCACTCTTTCTCCtgctttcctttccttttctaaCTTTCTGCCTTCCTCTCTTCTTTTCAtttactgtttttgtgttttttttagcactacTTTACACTGCAGTCACACTATAATACGCACAATGAAACGGAGAGCTCTCACGCTACCAGACCCAGTGAACACCTGGGGATTTTAATAAGCTTTACTTACTTTACGAATCCACTGATTGCTGCATTAATAGAAGACAAATTCAATGTTCTCCACACACGTTCCACGTTCCAATACTCCACTCTGTCCACCCAGTCACAAGACCACCCAGCATAGTGAGCTTACTGAGCTTAGAGAAGGTCTTCAGACCTGATA

Function

GO: NA

KEGG:

id description
K13524 ABAT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU19244 lncRNA upstream 11672 28685296 ~ 28685750 (+) True G14348
TU19217 lncRNA upstream 76302 28620714 ~ 28621120 (+) True G14338
TU19039 lncRNA upstream 90333 28598522 ~ 28607089 (+) False rbfox1
TU19032 lncRNA upstream 91530 28564706 ~ 28605892 (+) False rbfox1
TU19033 lncRNA upstream 91530 28564706 ~ 28605892 (+) False rbfox1
TU19239 lncRNA downstream 48701 28797685 ~ 28802417 (+) True G14346
TU19267 lncRNA downstream 142922 28891906 ~ 28892162 (+) True G14365
TU19266 lncRNA downstream 154871 28903855 ~ 28924253 (+) True G14364
TU19271 lncRNA downstream 176800 28925784 ~ 28927653 (+) True G14369
TU19281 lncRNA downstream 203667 28952651 ~ 29011035 (+) True G14377
XM_015604859.2 mRNA upstream 2494 28665212 ~ 28694928 (+) False mettl22
XM_022675863.1 mRNA upstream 2494 28665277 ~ 28694928 (+) True mettl22
XM_022677983.1 mRNA upstream 90339 28112046 ~ 28607083 (+) True rbfox1
XM_022675836.1 mRNA upstream 621207 28050229 ~ 28076215 (+) False LOC103031366
XM_022675845.1 mRNA upstream 621469 28050229 ~ 28075953 (+) False LOC103031366
XM_007245547.3 mRNA downstream 65134 28814118 ~ 28821841 (+) True dnase1
XM_022675892.1 mRNA downstream 65134 28814118 ~ 28820601 (+) False dnase1
XM_022675891.1 mRNA downstream 65134 28814118 ~ 28819528 (+) False dnase1
XM_022675889.1 mRNA downstream 66259 28815243 ~ 28821841 (+) False dnase1
XM_007245552.3 mRNA downstream 79618 28828602 ~ 28890929 (+) False LOC103022852
TU19049 other upstream 640522 28050129 ~ 28056900 (+) False LOC103031366
TU18843 other upstream 1656893 27009548 ~ 27040529 (+) True G14047
TU18257 other upstream 3024233 25668748 ~ 25673189 (+) False mfrp
TU18064 other upstream 3641319 25052513 ~ 25056103 (+) True G13445
TU17784 other upstream 3840400 24855933 ~ 24857022 (+) True G13237
TU19373 other downstream 380083 29129067 ~ 29129373 (+) True G14444
TU19421 other downstream 646176 29395160 ~ 29398166 (+) True G14480
TU19448 other downstream 925190 29674174 ~ 29689149 (+) False nubp1
TU19455 other downstream 984321 29733305 ~ 29742723 (+) True G14505
TU19643 other downstream 1511693 30260677 ~ 30268382 (+) False G14638

Expression Profile