RNA id: XM_007236736.3


Basic Information

Item Value
RNA id XM_007236736.3
length 1975
RNA type mRNA
GC content 0.46
exon number 8
gene id eif4h
representative False

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 25368694 ~ 25378622 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTCTGGTCTCTGTTCAGGCACTGCTGAGGCAGctaaagcagcagcagtaataTTGAAGGTCCCTCGTTCAGACTCCGCTTTCTGTGGACGGAGAACGCGGCCATGGCGGATTACGATGCTTACGACGACCGAGACCGGGCTTACGGGAGCTTTGGTGGCGGCAGAGGACCCCGAGGTGGAGGTGGCCCAGGTGGACCCCGCAAGCAGAAGGAACTGCCTACAGAACCCCCCTACACAGCCTATGTGGGAAACCTGCCCTTCAACACAGTACAAGGAGACATAGATGCCATTTTCAAAGACCTCAGTGTTAGGAGTGTGCGACTAGTAAGAGACAAAGAAACAGACAAATTCAAAGGTTTTTGTTATGTAGAGTTTGACGATTTGGAATCTCTTAAAGAAGCTTTGACGTACGATGGTGCTCTCCTTGGAGATCGATCTTTGAGGGTGGACATTGCAGAAGGCCGGAAGCAAGAGCGAGGTGGAGGGTTCGGCTTCCGAAAGGACGACAGAGGCCGCGGTGGCTCAAGAGGGGCCAGAGGAGGGGGACGCGAGTCTAGAGACGACTTCGACCACTCTGGAGGAGGCTATAGAGATGATGACTTCATGGGCGGGCGGAGTCGAGGTGGCGGCGGCGGTGGTGCCGGTGCCAGTCGTCCTGGTGACCGACGGATGGGTGGCGGAATGGGTCGCTTCAGGGATGGACCTCCACGCGGCCCGTCGGATTTCAGAGAACCCTCTGATgAGGAAAGAGCGCAGAGACCAAGGCTACAGTTGAAGCCCCGCACAGTCTCCGAACCCCTAAACCAAGTGGCCAATCCAAACTCGGCCATCTTTGGGGGTGCCAAGCCCAGGGAGGAGAATTGAGATAGCAGTGTGGCTGCATTATTCTGGAAGGCTAGACTGGATCTACGGGCTTTGTCCACGAAAAATCTTTCAAAGACACCTCTCAAAGGCATGTGAGCAGAGAGTGAGAGGTGCTGAGTTCTTCCCCTTTTCAGTAACCCAAAACAAGGCCTCGTGTGATTGGTTAAAGAGAAGCTGGATTCGGGGCCTATGGAAAAGAGCACGGAATAGGCTTATTATCTACCCGTGTCTTGTCATCTATATGTGAACCTCCCACACCTAATCAAGACTCAAAAGGACAGTGGCTTCAGTTTGGTTCTGTTGCCTTTGGGTAAGGACCTAACCACATGTGTAttgtttttctctccctttcccAAGGCACTCTTTTTGTTAACCCCTTTTGAAATTCTAGACACACAGGAGTAATTGCAGACCTGCTGTGTCTTTTTATGCTTCATAAATTGATGCTCCATTATTGATATAACGTTTTGGGCTTTCAGCATCCACTGTCTTAAACATTAAATGGATAAATGGCAAGAGAATCTGaatgtttgtttctgtttcatatatatataattctggCAATCCtttttgaaagatttttttgaCCAAGTCTGTTTAATCCAGGTAAGCGATGTTTTCTGCAATAGTGCAAGAAGAGTTTGTTTAGAGAAgtgtgtgatttaaaaaaaaaagtgctagaTATTGAACATGGATATCAGCTACAGTCTCAGTCAGGCAACTGTCAACTTCCACAGCGTGATAGCAGTGTATTTCATCAAAAACAAGTTAACTATTGATCACTCTTTAACACGGTCAGTAAAACTGCCTTGACATAGGAAGCTttttgaacaaacaaaaaaaaaaaagaagaaaaatcacCTGCACATTTCAGTTAAGGTGATGCCAGGCACTAGTCTTGTCTATTAGATCAAGTATAGATTTCTCTTTGGGTATCCATGTGttgcaacatttttattttacattttactggaCATGAAATGGAAGAAGTAGAGCCTTTTCTTACTGTACTATAGAACGATTGgctgtttttattctttttttttttttttttcattttcctacACTGTTTATGGCAATAAAAATATCATCTTAAAGTGTTTcaaattaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU18153 lncRNA upstream 29854 25328176 ~ 25338840 (+) False LOC103040166
TU18149 lncRNA upstream 30269 25246996 ~ 25338425 (+) False LOC103040166
TU18187 lncRNA downstream 22398 25401020 ~ 25402995 (+) False G13545
TU18188 lncRNA downstream 22398 25401020 ~ 25403118 (+) True G13545
TU18189 lncRNA downstream 22398 25401020 ~ 25402937 (+) False G13545
TU18212 lncRNA downstream 129583 25508205 ~ 25508449 (+) True G13565
TU18231 lncRNA downstream 224710 25603332 ~ 25642743 (+) False LOC103045399
XM_007236732.2 mRNA upstream 29259 25334920 ~ 25339435 (+) False LOC103040166
XM_022675409.1 mRNA upstream 29259 25335198 ~ 25339435 (+) True LOC103040166
XM_022677957.1 mRNA upstream 207053 25148277 ~ 25161641 (+) True LOC111194299
XM_015602313.2 mRNA upstream 281945 25072302 ~ 25086749 (+) False lipt2
XM_007236740.3 mRNA downstream 3539 25382161 ~ 25400864 (+) False rffl
XM_007236745.3 mRNA downstream 3539 25382161 ~ 25400864 (+) False rffl
XM_022675439.1 mRNA downstream 3540 25382162 ~ 25400864 (+) True rffl
XM_007236746.3 mRNA downstream 3546 25382168 ~ 25400864 (+) False rffl
XM_007236743.3 mRNA downstream 3862 25382484 ~ 25400864 (+) False rffl
TU18064 other upstream 312591 25052513 ~ 25056103 (+) True G13445
TU17784 other upstream 511672 24855933 ~ 24857022 (+) True G13237
TU17745 other upstream 651468 24714351 ~ 24717226 (+) False ccdc9
TU17747 other upstream 651468 24715890 ~ 24717226 (+) False ccdc9
TU17542 other upstream 1513341 23853998 ~ 23855353 (+) True G13067
TU18257 other downstream 290126 25668748 ~ 25673189 (+) False mfrp
TU18843 other downstream 1630926 27009548 ~ 27040529 (+) True G14047
TU19049 other downstream 2671507 28050129 ~ 28056900 (+) False LOC103031366
TU19373 other downstream 3750445 29129067 ~ 29129373 (+) True G14444
TU19421 other downstream 4016538 29395160 ~ 29398166 (+) True G14480

Expression Profile