LOC103021785 (LOC103021785)


Basic Information

Item Value
gene id LOC103021785
gene name LOC103021785
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 25693699 ~ 25698633 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007236764.3
CCTGAAAGCATAAGACAGGGTTCATTTCCAGTCAGATAAAACCTCAAAGACGGTCCTGCAGTAGTGTCCTCAGTTCATCTGCTCCAACTGCTCTCCAAACCACAagagagagattcgtCTGTCCATAACTCAGAGATGAAGACAGCTGCAGTAGCTGTACTGGGCCTGCTGGGAGCACTATGTCTATGCTCAAGGACAGAGGCAACTACTGCCTGGGATGTTTTACGCAATTCTGCAGCAAACTTTACAGGGATTCTGCCCTGCGGTGGCTGGAACTGTGACTGTGAGTTCAGGAATCCGAAAGGCTGCTGCTGTGTGGCTTCACAGTTGTCCCAGCTGGAGGAGGCCACCTTTATGCGCATGGTGGGCTTATGGACAAACCTGACCGGTCTCACCGGACAAATTGATGAAATCATAGATGGACGTAACATAGCATTTACTGCTACACTGACACCAACGCCTGGCTGTTTTGGGCCTTTCACAAGAAACGTGTCTATTCCATACCAGAACATTACGCTCAACCAAGGCTATGGGTATAATGGTGCATTAGGTGCTTTCACAGCTCCTCGCCCCGGCGTTTACTCCTTCAGCTACACTGTGTACTCCAACATGGGGCCGGCACGTGAGCGCATCTACTATAAGACTCAGCTGGTGAAGGATGGCCAGGTGATCGCCTCCTCCTGGGAGGACAACCGTGAAGACTCTGAGGACAGCTCCACACAGTCTGTGCTGCTGCCGCTCAGACAAGGCAACCAGGTGTACGTGGAGTTGGTGTCAGGCAGGTATCTGTGTGCGGACACTCAGAACTACAACACCTTCAGCGGATACCTGGTCTACCCCCTCCTTGAAATGTGAGACAGATCATCAgaagaaaacacttttttattcacAGCCTGTGAAAAATAGAGTTAAAGAATTGGCCTACAACTGGCCCAATATTGTTAATAGATTACTTGAACCAACATGGTGCAGGACGACACATTAAGTACATTCAGTTATGTGGACAAGTTGATATGATATGGTAACTTGTTCATTTTCATACTCAACAACTGAAtgtatattaaaacaatatttttcaaTCTTTTCAATACAcagaattaacaaaaatatcaaAGTACTAGTGTCTAATCTGTAATCTGTCTCATGTTTCCTGATGGATTTTATTCATAAATCTAGGAAAGACTAAATTCCATGTATTGTAAAAACATCTTCTAATGTTGATATTAAAGATTGCCATTGCACCAAGTTTTAA

Function

NR:

description
C1q-related factor-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007236764.3 True 1252 mRNA 0.45 5 25693699 25698633

Neighbor

gene id symbol gene type direction distance location
LOC103047847 LOC103047847,LOC108426896 coding upstream 2544 25689054 ~ 25691155 (+)
LOC103047330 NA coding upstream 7056 25680398 ~ 25686643 (+)
trim50 trim50 coding upstream 157729 25526943 ~ 25535970 (+)
LOC103044362 LOC108277440,LOC108426936 coding upstream 187655 25473577 ~ 25506044 (+)
LOC103043872 tfdp2,LOC108426935,LOC108277808,LOC107744026,LOC107704305,LOC107680101,LOC107720963 coding upstream 225010 25411286 ~ 25468689 (+)
LOC103022406 ano7 coding downstream 6361 25704994 ~ 25721667 (+)
rnf168 NA coding downstream 24086 25722719 ~ 25729669 (+)
LOC103031763 NA coding downstream 34244 25732877 ~ 25741663 (+)
LOC103022923 LOC103022923,LOC108426899 coding downstream 49996 25748629 ~ 25765785 (+)
LOC103023233 NA coding downstream 76162 25774795 ~ 25783047 (+)
G13589 NA non-coding upstream 49336 25644013 ~ 25644363 (+)
G13565 NA non-coding upstream 185250 25508205 ~ 25508449 (+)
G13545 NA non-coding upstream 290581 25401020 ~ 25403118 (+)
G13520 NA non-coding upstream 395472 25294469 ~ 25298227 (+)
G13514 NA non-coding upstream 461856 25230982 ~ 25231843 (+)
G13607 NA non-coding downstream 864 25699497 ~ 25703950 (+)
G13612 NA non-coding downstream 28674 25727307 ~ 25775610 (+)
LOC111194239 NA non-coding downstream 209108 25907741 ~ 25908666 (+)
G13733 nars2,LOC107670421,LOC107699825 non-coding downstream 305013 26003646 ~ 26006679 (+)
G13822 NA non-coding downstream 750634 26449267 ~ 26449469 (+)
mfrp mfrp other upstream 20463 25660898 ~ 25673236 (+)
LOC103045399 LOC108426937,LOC108277812 other upstream 50956 25561633 ~ 25642743 (+)
LOC103040166 LOC103040166,LOC108426893 other upstream 354264 25246996 ~ 25339435 (+)
G13445 spcs2,LOC107677086 other upstream 637596 25052513 ~ 25056103 (+)
G13237 NA other upstream 836677 24855933 ~ 24857022 (+)
LOC103023549 gpr171 other downstream 89951 25788584 ~ 25795084 (+)
G14047 NA other downstream 1310915 27009548 ~ 27040529 (+)
LOC103031366 LOC105899914 other downstream 2351496 28050129 ~ 28077818 (+)
rbfox1 rbfox1 other downstream 2413413 28112046 ~ 28607089 (+)
G14444 NA other downstream 3430434 29129067 ~ 29129373 (+)

Expression


Co-expression Network