G13607


Basic Information

Item Value
gene id G13607
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 25699497 ~ 25703950 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU18274
TCAGTAATCAGATTGTTCTCAAAATTCCATCAGTTTTAACAGCCGGCAAGAAACCTGCATCGATAAGCCTAGTGTCCATTCTTCTGGTCTTTTGCAAGCAACAGGTCCATGTATGCGCCCTCAATCAGGTCCTCGTTCTTTACTCCCAAATCCTGCATCAGCTGGTTGGCTATGGCAACTCCTTCCTCAGTGCTCTGGTTTTCTTTCATTACTACCTCAAGCTCCATGAAGTTTCCCAGGCCTTCCACAGTGTCCACATGCACCCTCGTCTGTCCCACCATATAGAGCCGTCTCTCCTTCTTTACCTCACCAACTTGTCCCAGAGCATCTGTCAGGACCTTTCTCAGTCCGTCAGGATCATCTGTGGCAGTGATGGAGTAGTTGGAAAGTTTGGGTCCATCCATGTCTGGTCTTTCATAGAATATCAGCTGTCCACTTCCATTTTTAAAATCCCTCAGTTTGAGACGGCCCTTGCTCACAGTGAAGAAAGTGTCCTGTTGCTTGATGATGGTTCCCTCTGACCCACTCATCTCCTTTGCACGCTGAGTCAGAGTATCATGATCATACACCTGGGCTTTTATCTCTACGTTGGATGGCATTTCTGCAGCAGATCTTCACACAACCACGCTAACCGTTCTCAGCTCCCAGCACCTGCAGACACAGCTCACAACACGAGGGGATTGGCGCGCTTCTGAACTTGGCGTCTTccccttcaaaataaaagccccaaACTAGTCTCACAGATCAGAACAAGTCTATGCATGTCTCTCCGCATCATGAACAGAACAATAGAAAGTCTGCTAAGTTACATAGAGTGCAATATTTTACTTGCCCttcaatgtaatatatttttttcccctgtaAAGTTGTAATTTTGGAAGATTTGTATCCCAAGTATTTGGAGTACAAATTGtggcacagtggcttagtgCTTTTTGCCTGACTGGCCTGGGCTCTgtggttcaagtccctatctgggagTGAGAGTAACAGCACTTTAAATTGCCCAAAAAGGTGTATTGTGTGCAGAGGTTCTACCTATCCCGCAAGGATATGGAGTTTCTAGCATGTAAATAAGGGCTCCCTAATAATAAACTCCCAC
>TU18275
TCAGTAATCAGATTGTTCTCAAAATTCCATCAGTTTTAACAGCCGGCAAGAAACCTGCATCGATAAGCCTAGTGTCCATTCTTCTGGTCTTTTGCAAGCAACAGGTCCATGTATGCGCCCTCAATCAGGTCCTCGTTCTTTACTCCCAAATCCTGCATCAGCTGGTTGGCTATGGCAACTCCTTCCTCAGTGCTCTGGTTTTCTTTCATTACTACCTCAAGCTCCATGAAGTTTCCCAGGCCTTCCACAGTGTCCACATGCACCCTCGTCTGTCCCACCATATAGAGCCGTCTCTCCTTCTTTACCTCACCAACTTGTCCCAGAGCATCTGTCAGGACCTTTCTCAGTCCGTCAGGATCATCTGTGGCAGTGATGGAGTAGTTGGAAAGTTTGGGTCCATCCATGTCTGGTCTTTCATAGAATATCAGCTGTCCACTTCCATTTTTAAAATCCCTCAGTTTGAGACGGCCCTTGCTCACAGTGAAGAAAGTGTCCTGTTGCTTGATGATGGTTCCCTCTGACCCACTCATCTCCTTTGCACGCTGAGTCAGAGTATCATGATCATACACCTGGGCTTTTATCTCTACGTTGGATGGCATTTCGTTCTCAGCTCCCAGCACCTGCAGACACAGCTCACAACACGAGGGGATTGGCGCGCTTCTGAACTTGGCGTCTTccccttcaaaataaaagccccaaACTAGTCTCACAGATCAGAACAAGTCTATGCATGTCTCTCCGCATCATGAACAGAACAATAGAAAGTCTGCTAAGTTACATAGAGTGCAATATTTTACTTGCCCttcaatgtaatatatttttttcccctgtaAAGTTGTAATTTTGGAAGATTTGTATCCCAAGTATTTGGAGTACAAATTGtggcacagtggcttagtgCTTTTTGCCTGACTGGCCTGGGCTCTgtggttcaagtccctatctgggagTGAGAGTAACAGCACTTTAAATTGCCCAAAAAGGTGTATTGTGTGCAGAGGTTCTACCTATCCCGCAAGGATATGGAGTTTCTAGCATGTAAATAAGGGCTCCCTAATAATAAACTCCCAC
>TU18276
TCAGTAATCAGATTGTTCTCAAAATTCCATCAGTTTTAACAGCCGGCAAGAAACCTGCATCGATAAGCCTAGTGTCCATTCTTCTGGTCTTTTGCAAGCAACAGGTCCATGTATGCGCCCTCAATCAGTCCGTCAGGATCATCTGTGGCAGTGATGGAGTAGTTGGAAAGTTTGGGTCCATCCATGTCTGGTCTTTCATAGAATATCAGCTGTCCACTTCCATTTAAAATCCCTCAGTTTGAGACGGCCCTTGCTCACAGTGAAGAAAGTGTCCTGTTGCTTGATGATGGTTCCCTCTGACCCACTCATCTCCTTTGCACGCTGAGTCAGAGTATCATGATCATACACCTGGGCTTTTATCTCTACGTTGGATGGCATTTCTGCGAAACAgagtcattttattattttatattctcctAAACACTAAGGTGCCTGTAGGACATCTTTGGAGTGACG

Function

GO:

id name namespace
GO:0071840 cellular component organization or biogenesis biological_process
GO:0016043 cellular component organization biological_process

KEGG:

id description
ko03460 Fanconi anemia pathway

RNA

RNA id representative length rna type GC content exon number start site end site
TU18274 True 1102 lncRNA 0.46 5 25699497 25703950
TU18275 False 1071 lncRNA 0.46 5 25699497 25703950
TU18276 False 456 lncRNA 0.42 3 25699497 25702005

Neighbor

gene id symbol gene type direction distance location
LOC103021785 LOC103021785 coding upstream 864 25693699 ~ 25698633 (+)
LOC103047847 LOC103047847,LOC108426896 coding upstream 8342 25689054 ~ 25691155 (+)
LOC103047330 NA coding upstream 12854 25680398 ~ 25686643 (+)
trim50 trim50 coding upstream 163527 25526943 ~ 25535970 (+)
LOC103044362 LOC108277440,LOC108426936 coding upstream 193453 25473577 ~ 25506044 (+)
LOC103022406 ano7 coding downstream 1044 25704994 ~ 25721667 (+)
rnf168 NA coding downstream 18769 25722719 ~ 25729669 (+)
LOC103031763 NA coding downstream 28927 25732877 ~ 25741663 (+)
LOC103022923 LOC103022923,LOC108426899 coding downstream 44679 25748629 ~ 25765785 (+)
LOC103023233 NA coding downstream 70845 25774795 ~ 25783047 (+)
G13589 NA non-coding upstream 55134 25644013 ~ 25644363 (+)
G13565 NA non-coding upstream 191048 25508205 ~ 25508449 (+)
G13545 NA non-coding upstream 296379 25401020 ~ 25403118 (+)
G13520 NA non-coding upstream 401270 25294469 ~ 25298227 (+)
G13514 NA non-coding upstream 467654 25230982 ~ 25231843 (+)
G13612 NA non-coding downstream 23357 25727307 ~ 25775610 (+)
LOC111194239 NA non-coding downstream 203791 25907741 ~ 25908666 (+)
G13733 nars2,LOC107670421,LOC107699825 non-coding downstream 299696 26003646 ~ 26006679 (+)
G13822 NA non-coding downstream 745317 26449267 ~ 26449469 (+)
G13823 NA non-coding downstream 745571 26449521 ~ 26457756 (+)
mfrp mfrp other upstream 26261 25660898 ~ 25673236 (+)
LOC103045399 LOC108426937,LOC108277812 other upstream 56754 25561633 ~ 25642743 (+)
LOC103040166 LOC103040166,LOC108426893 other upstream 360062 25246996 ~ 25339435 (+)
G13445 spcs2,LOC107677086 other upstream 643394 25052513 ~ 25056103 (+)
G13237 NA other upstream 842475 24855933 ~ 24857022 (+)
LOC103023549 gpr171 other downstream 84634 25788584 ~ 25795084 (+)
G14047 NA other downstream 1305598 27009548 ~ 27040529 (+)
LOC103031366 LOC105899914 other downstream 2346179 28050129 ~ 28077818 (+)
rbfox1 rbfox1 other downstream 2408096 28112046 ~ 28607089 (+)
G14444 NA other downstream 3425117 29129067 ~ 29129373 (+)

Expression


Co-expression Network