rnf168


Basic Information

Item Value
gene id rnf168
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 25722719 ~ 25729669 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022675562.1
TTGTGCGCATGTGTGTTTGTTGAACGTGAGGTAGGAGCTGCTGGTTGATTTTTCCCGGTTTTTCGGGCTGCGGCCTCTGTCTCTGGTTCCTGTCCTGGAGACCCTCAGAGGAGTCTACTCTAGATCCCCTGGAGTGAGAGAGGTAGAACGGCGGCAGGATGCCACCAGTGTCAGAGGTGGAGCCGAAGCCCAAGCTGGTGCAGGGGGGCTCTGGACAGCTCACTCGGGCAGACTGCTTATGCCCCATCTGTCTAGAGATCTTCCTGGAGCCTGTCACTCTGCCATGCGAGCATACCTTTTGCAAACCTTGCTTTCTGGAAACGGTGGATAAGGCCAACATGTGCTGTCCGCTGTGCCGGAAGCGAGTGTCCACTTGGGCCAGGCTTAATACTAGAAAAAAGACTCTGGTTAATGTGGAGCTTTGGAAACGTATCCAAAAGGCCTTCCCTGTACAGTGCCAGCGCAGATTAAATGGGGttgaggaggagcaggaggaggaagttGACATGTTGATTCCAAAACCCAAGGTAAGTGAACCAGGCGAACTCAGACAAGAGTATGAGGACCAAGTTAGCAAGGTGACTATGGCAGAGAAGCAAGCCATGGAGGAGGCAGAGAGGAGGGCAAGTGAGGAATACATCCAGCGGCTCCTGGCTGAAGAAGAGGAGCGAATAGCTGAGGAGAGGAGGATGCAGGAAAACAGGCAGCTGGAGGAGGATGAGCAACTGGCTAGATTGCTCAGTGAAGAGCTGAATTCCACACCAGTTTTGGAATCTCACACAAATGTCAAACCTAATGATGCTACTTCAGCCAAGAAAAAGAAACCCAGTGTTGGACACATTGAGAAGTTTCTGTGCCCAGTGCCTTTTCGACAGACAAGTGCTGAAACCAGTCCGACATCCACCCTTTCTGCCAATAAGGAAAACATTTTATCCTCACCGACAACACTGTGGCCTTGCCCTAAGAACCCTCCCTCCAGCAATGAAATGCCTGGTTTAGACTACTTTGGGATGCCTTCTACCTCAAAATTTGGTCAAGACAGTTCTGAACAGCTTTCAGCTAACAGAGCAAATATCTCCTCTAAGAGGAAGACTTTGGACACTGACCTGGCTGCTGAGGATGCTTACTTTAATAAGAGGCCTTGCGGCTCTGTACGGCCTGAACCATCTCCAAAGGAGGATATTCTGCAGGAACTAGCCCTGCAGGAGGAAATACTGCTGAGCCGCTGGCAGCAGGAAGAGGAGGACAGACGACTGGCTCAGCAGCTTCAGCGAGAGCTGGACCGGGAGAGCACTGTGGACCGCAGGAAGGGCTCTGCTGACGGTTATCTACTGAGGGAGAAAACCAGTCCTTCTTCCACCAGCACAAGCCCAGGTGAGGAGAGGGGCAATACCAGTGACTCTGTAAAAACTAAAGCAGGAAGTGTGAAGAAGTCATCCAGAGCCCATCAAGAGGGAAAAACTACAAAGAAAAGCCACGTCTGCACACAGTCGTCACCCTCCACACCCTCTAGTTCAGTTCAGAGGGGTGCAAAGCAGACCACCCTCACTGACATGTTTCCTAACATGGGCAGCTGACCTTAAAGTTTGTATACTTCAAAatttctaaactttaaatctgttCATTTTCAGTTATTGCCTTTTCTTGTTTAACGACAGCAAATGATAGTATatagagaatgaaagaaaagatTGTGACAAACAGTCCTTTTACTGTTGTCTAGCATATTAGCGATAAAAGGTGCCGGTTGTGTATTTGAAGTGGTTGAAAGTGttaatttctggaaaaaaaaagaaagcaaataatatttttttatgcatgtttCTAATTTGTGGTAGACCTCGGAAGTTGTTTTATGAATAAAACTATCATCAAaaagtttcctttttttattttgtcacattatgctattgttttttt

Function

NR:

description
E3 ubiquitin-protein ligase rnf168-like

GO:

id name namespace
GO:0006302 double-strand break repair biological_process
GO:0045739 positive regulation of DNA repair biological_process
GO:0035518 histone H2A monoubiquitination biological_process
GO:0070535 histone H2A K63-linked ubiquitination biological_process
GO:0036351 histone H2A-K13 ubiquitination biological_process
GO:0036352 histone H2A-K15 ubiquitination biological_process
GO:0045190 isotype switching biological_process
GO:0010212 response to ionizing radiation biological_process
GO:0045900 negative regulation of translational elongation biological_process
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0035861 site of double-strand break cellular_component
GO:0000151 ubiquitin ligase complex cellular_component
GO:0005634 nucleus cellular_component
GO:0042393 histone binding molecular_function
GO:0070530 K63-linked polyubiquitin modification-dependent protein binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0004842 ubiquitin-protein transferase activity molecular_function
GO:0003682 chromatin binding molecular_function

KEGG:

id description
K20779 RNF168; E3 ubiquitin-protein ligase RNF168

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022675562.1 True 1920 mRNA 0.47 7 25722719 25729669

Neighbor

gene id symbol gene type direction distance location
LOC103022406 ano7 coding upstream 1052 25704994 ~ 25721667 (+)
LOC103021785 LOC103021785 coding upstream 24086 25693699 ~ 25698633 (+)
LOC103047847 LOC103047847,LOC108426896 coding upstream 31564 25689054 ~ 25691155 (+)
LOC103047330 NA coding upstream 36076 25680398 ~ 25686643 (+)
trim50 trim50 coding upstream 186749 25526943 ~ 25535970 (+)
LOC103031763 NA coding downstream 3208 25732877 ~ 25741663 (+)
LOC103022923 LOC103022923,LOC108426899 coding downstream 18960 25748629 ~ 25765785 (+)
LOC103023233 NA coding downstream 45126 25774795 ~ 25783047 (+)
clrn1 clrn1 coding downstream 71928 25801597 ~ 25808492 (+)
mindy4b fam188b2,LOC107598659 coding downstream 87074 25816743 ~ 25829067 (+)
G13607 NA non-coding upstream 18769 25699497 ~ 25703950 (+)
G13589 NA non-coding upstream 78356 25644013 ~ 25644363 (+)
G13565 NA non-coding upstream 214270 25508205 ~ 25508449 (+)
G13545 NA non-coding upstream 319601 25401020 ~ 25403118 (+)
G13520 NA non-coding upstream 424492 25294469 ~ 25298227 (+)
LOC111194239 NA non-coding downstream 178072 25907741 ~ 25908666 (+)
G13733 nars2,LOC107670421,LOC107699825 non-coding downstream 273977 26003646 ~ 26006679 (+)
G13822 NA non-coding downstream 719598 26449267 ~ 26449469 (+)
G13823 NA non-coding downstream 719852 26449521 ~ 26457756 (+)
G13828 NA non-coding downstream 728325 26457994 ~ 26468572 (+)
mfrp mfrp other upstream 49483 25660898 ~ 25673236 (+)
LOC103045399 LOC108426937,LOC108277812 other upstream 79976 25561633 ~ 25642743 (+)
LOC103040166 LOC103040166,LOC108426893 other upstream 383284 25246996 ~ 25339435 (+)
G13445 spcs2,LOC107677086 other upstream 666616 25052513 ~ 25056103 (+)
G13237 NA other upstream 865697 24855933 ~ 24857022 (+)
LOC103023549 gpr171 other downstream 58915 25788584 ~ 25795084 (+)
G14047 NA other downstream 1279879 27009548 ~ 27040529 (+)
LOC103031366 LOC105899914 other downstream 2320460 28050129 ~ 28077818 (+)
rbfox1 rbfox1 other downstream 2382377 28112046 ~ 28607089 (+)
G14444 NA other downstream 3399398 29129067 ~ 29129373 (+)

Expression


Co-expression Network