G13823


Basic Information

Item Value
gene id G13823
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 26449521 ~ 26457756 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU18544
ctctcccttatcctgacccaactattcctctcccttatcctgacccaactattcctctcccctattctgacccgactattcctctcccttatcctacCCCAAcgattcctctcccttatcctgacccaactattcctctttcatatcctgacccaactattactctcccttatcctgacccgactattcctctcccttatcctgacccgactattcctctctcttatcctgacccaactattcctctcccttatcctgacccgactattcctctcccttatcctgacccgactattcctctcccttatcctgacccgactattcctctcccttatcctgacccaactattcctctttcatatcctgacccaactattctctcccttatcctgacccgactattcctctcccttatcctgacccaactt
>TU18546
ccttatcctgacccgactattcctctcccttatcctgacccgactattcctctcccttatcctgacccgactattcctctattcctctcccttatcctgacccgactattcctctcccttatcctgacccgactattcctctcaCTTTTCCTACcccgactattcctctctcttatcctgacccgactattcctctcccttatcctgacccgactaatcctctcccttatcctgacccgactaatcctctcccttatcctgacccaactattcctctcccttatcctgacccgactattcctctcccttatcctgacccgactattcctctcaCTTTTCCTACcccgactattcctctctcttatcctgacccgactattcctctcccttatcctaacccgactattcctctcccttattctGACCCGACTAATCCTCTCC
>TU18550
ctattcctctcccttatcctgacccaactattcctctcccttatcctgacccgactattcctctcccttatcctgacccgactattcctctcaCTTTTCCTACcccgactattcctctctcttatcctgacccgactattcctctcccttatcctaacccgactattcctctcccttattctGACCCGACTaatcctctcccttatcctgacccgactattcctcttttcctctcccttatcctgacccgactaatcctctcccttatcctgacccgactattcctctccttatcctgacccgactattcctctcccttatcctgacccgactattcctctcccttatcctgacccgactattcctctccctta
>TU18552
ccttatcctgacccgactattcctctcccttatcctgacccgactattcctctcccttatcctgacccgactattcctctattcctctcccttatcctgacccgactattcctctcccttatcctgacccgactattcctctcaCTTTTCCTACcccgactattcctctctcttatcctgacccgactattcctctcccttatcctgacccgactaatcctctcccttatcctgacccgactattcctctcccttatcctgacccgactaatcctctcccttatcctgacccgactattcctctcccttatcctgacccgactattcctctcccttatcctgacccgactattcctctcccttatcctgacccgactaatcctctcccttatcctgacccgactaatcctctcccttatcctgacccgactattcctctcccttatcctgacccaactattcctctcccttatcctgacccgactattcctctcccttatcctgacc
>TU18553
ccttatcctgacccgactattcctctcccttatcctgacccgactattcctctcccttatcctgacccgactattcctctattcctctcccttatcctgacccgactattcctctcccttatcctgacccgactattcctctcaCTTTTCCTACcccgactattcctctctcttatcctgacccgactattcctctcccttatcctaacccgactattcctctcacttatcctgacccaactattcctctcccttatcctgacccgactaATcttctcccttatcct
>TU18562
ctctcccttatcctgacccaactattcctctcccttatcctgacccaactattcctctcccctattctgacccgactattcctctcccttatcctacCCCAAcgattcctctcccttatcctgacccaactattcctctttcatatcctgacccaactattactctcccttatcctgacccaactattcctcttccTTATCCTGACCAAACTATTCCTCTTTcatatcctgacccaactattcctctcccttatcctaacccaactattcctctcccttatcctgacccaactattcctctcccttatcctgacccgactattcctctcccttatcctgacccgactattcctctcccttatcctgacccgactattcctctcccttatcctgacccaactattcctctttcatatcctgacccaactattctctcccttatcctgacccgactattcctctcccttatcctgacccaactt
>TU18567
ccttatcctgacccgactattcctctcccttatcctgacccgactattcctctcccttatcctgacccgactattcctctattcctctcccttatcctgacccgactattcctctcccttatcctgacccgactattcctctcaCTTTTCCTACcccgactattcctctctcttatcctgacccgactaatcctctcccttatcctgacccgactattcctctcacttaTCCTACcccgactattcctctcccttatcctgacccgactattcctctcccttatcctgacccgactattcctctcccttattctGACCCGACTaatcctctcccttatcctgacccgactattcctcttttcctctcccttatcctgacccgactaatcctctcccttatcctgacccgactattcctctcccttatcctgacccgactaatcctctcccttatcctgacccgactattcctctcccttatcctgacccaactattcctctcccttatcctgacccgactattcctctcccttatcctgacc

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU18544 False 428 lncRNA 0.39 2 26449521 26450382
TU18546 False 441 lncRNA 0.50 3 26452046 26456314
TU18550 False 374 lncRNA 0.50 2 26456114 26456820
TU18552 False 507 lncRNA 0.51 4 26452046 26457756
TU18553 False 287 lncRNA 0.40 3 26452046 26453299
TU18562 False 482 lncRNA 0.47 2 26449521 26450382
TU18567 True 542 lncRNA 0.32 4 26452046 26457756

Neighbor

gene id symbol gene type direction distance location
mindy4b fam188b2,LOC107598659 coding upstream 620454 25816743 ~ 25829067 (+)
clrn1 clrn1 coding upstream 641029 25801597 ~ 25808492 (+)
LOC103023233 NA coding upstream 666474 25774795 ~ 25783047 (+)
LOC103022923 LOC103022923,LOC108426899 coding upstream 683736 25748629 ~ 25765785 (+)
LOC103031763 NA coding upstream 707858 25732877 ~ 25741663 (+)
dscaml1 dscaml1,LOC107752281 coding downstream 39796 26497552 ~ 26675015 (+)
LOC103037665 NA coding downstream 243803 26701559 ~ 26708772 (+)
pgam5 pgam5 coding downstream 501628 26959384 ~ 26964690 (+)
LOC107197223 NA coding downstream 602389 27060145 ~ 27103854 (+)
LOC111194302 NA coding downstream 646276 27104032 ~ 27112068 (+)
G13822 NA non-coding upstream 52 26449267 ~ 26449469 (+)
G13733 nars2,LOC107670421,LOC107699825 non-coding upstream 442842 26003646 ~ 26006679 (+)
LOC111194239 NA non-coding upstream 540855 25907741 ~ 25908666 (+)
G13612 NA non-coding upstream 673911 25727307 ~ 25775610 (+)
G13607 NA non-coding upstream 745571 25699497 ~ 25703950 (+)
G13828 NA non-coding downstream 238 26457994 ~ 26468572 (+)
G13829 NA non-coding downstream 11001 26468757 ~ 26479890 (+)
G13838 NA non-coding downstream 25961 26483717 ~ 26484567 (+)
G13842 NA non-coding downstream 38463 26496219 ~ 26496421 (+)
G13848 NA non-coding downstream 68956 26526712 ~ 26529638 (+)
LOC103023549 gpr171 other upstream 654437 25788584 ~ 25795084 (+)
mfrp mfrp other upstream 776285 25660898 ~ 25673236 (+)
LOC103045399 LOC108426937,LOC108277812 other upstream 806778 25561633 ~ 25642743 (+)
LOC103040166 LOC103040166,LOC108426893 other upstream 1110086 25246996 ~ 25339435 (+)
G13445 spcs2,LOC107677086 other upstream 1393418 25052513 ~ 25056103 (+)
G14047 NA other downstream 551792 27009548 ~ 27040529 (+)
LOC103031366 LOC105899914 other downstream 1592373 28050129 ~ 28077818 (+)
rbfox1 rbfox1 other downstream 1654290 28112046 ~ 28607089 (+)
G14444 NA other downstream 2671311 29129067 ~ 29129373 (+)
G14480 NA other downstream 2937404 29395160 ~ 29398166 (+)

Expression


Co-expression Network