RNA id: TU18553


Basic Information

Item Value
RNA id TU18553
length 287
lncRNA type inter_gene
GC content 0.40
exon number 3
gene id G13823
representative False

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 26449521 ~ 26457756 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ccttatcctgacccgactattcctctcccttatcctgacccgactattcctctcccttatcctgacccgactattcctctattcctctcccttatcctgacccgactattcctctcccttatcctgacccgactattcctctcaCTTTTCCTACcccgactattcctctctcttatcctgacccgactattcctctcccttatcctaacccgactattcctctcacttatcctgacccaactattcctctcccttatcctgacccgactaATcttctcccttatcct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU18544 lncRNA upstream 1664 26449521 ~ 26450382 (+) False G13823
TU18562 lncRNA upstream 1664 26449521 ~ 26450382 (+) False G13823
TU18543 lncRNA upstream 2577 26449267 ~ 26449469 (+) True G13822
TU18438 lncRNA upstream 445367 26003646 ~ 26006679 (+) True G13733
XR_002650999.1 lncRNA upstream 543380 25907741 ~ 25908666 (+) True LOC111194239
TU18550 lncRNA downstream 2815 26456114 ~ 26456820 (+) False G13823
TU18574 lncRNA downstream 4695 26457994 ~ 26468572 (+) True G13828
TU18575 lncRNA downstream 15458 26468757 ~ 26479890 (+) True G13829
TU18584 lncRNA downstream 30418 26483717 ~ 26484567 (+) True G13838
TU18588 lncRNA downstream 42920 26496219 ~ 26496421 (+) True G13842
XM_022675621.1 mRNA upstream 622979 25816743 ~ 25829067 (+) True mindy4b
XM_007236771.3 mRNA upstream 643554 25801597 ~ 25808492 (+) True clrn1
XM_007236772.3 mRNA upstream 645126 25801597 ~ 25806920 (+) False clrn1
XM_007236770.3 mRNA upstream 657396 25788584 ~ 25794650 (+) True LOC103023549
XM_007236769.3 mRNA upstream 668999 25774797 ~ 25783047 (+) True LOC103023233
XM_022675689.1 mRNA downstream 44253 26497552 ~ 26675015 (+) True dscaml1
XM_022675694.1 mRNA downstream 44253 26497552 ~ 26675015 (+) False dscaml1
XM_022675691.1 mRNA downstream 44254 26497553 ~ 26675015 (+) False dscaml1
XM_007237662.3 mRNA downstream 248260 26701559 ~ 26708772 (+) True LOC103037665
XM_022675737.1 mRNA downstream 506085 26959384 ~ 26964690 (+) True pgam5
TU18257 other upstream 778857 25668748 ~ 25673189 (+) False mfrp
TU18064 other upstream 1395943 25052513 ~ 25056103 (+) True G13445
TU17784 other upstream 1595024 24855933 ~ 24857022 (+) True G13237
TU17745 other upstream 1734820 24714351 ~ 24717226 (+) False ccdc9
TU18843 other downstream 556249 27009548 ~ 27040529 (+) True G14047
TU19049 other downstream 1596830 28050129 ~ 28056900 (+) False LOC103031366
TU19373 other downstream 2675768 29129067 ~ 29129373 (+) True G14444
TU19421 other downstream 2941861 29395160 ~ 29398166 (+) True G14480
TU19448 other downstream 3220875 29674174 ~ 29689149 (+) False nubp1

Expression Profile