RNA id: TU18438


Basic Information

Item Value
RNA id TU18438
length 235
lncRNA type inter_gene
GC content 0.52
exon number 2
gene id G13733
representative True

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 26003646 ~ 26006679 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AGCTAGCCGTGTCTTCAATAGCTCTGGTCTTTCCTCTCTAAGAGAACCGCCACACAGCTCCCCCACAATGGGCACCAAGAGGTCTACAGCTGCTGCCGTGTGCTGAGGCTGATCCTGGTTGTCTCTGGCGTAAAAAGGCTTCAGGTCATAGGGGTAATCAGTTACAAAGACTGGAACATCCCCACAGTGCTTAACTAGGAACTTCTCATGCTCGGTCTGAAGATCACAGCCCCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002650999.1 lncRNA upstream 94980 25907741 ~ 25908666 (+) True LOC111194239
TU18389 lncRNA upstream 208562 25794520 ~ 25795084 (+) False LOC103023549
TU18285 lncRNA upstream 228036 25727307 ~ 25775610 (+) True G13612
TU18274 lncRNA upstream 299696 25699497 ~ 25703950 (+) True G13607
TU18543 lncRNA downstream 442588 26449267 ~ 26449469 (+) True G13822
TU18544 lncRNA downstream 442842 26449521 ~ 26450382 (+) False G13823
TU18562 lncRNA downstream 442842 26449521 ~ 26450382 (+) False G13823
TU18546 lncRNA downstream 445367 26452046 ~ 26456314 (+) False G13823
TU18552 lncRNA downstream 445367 26452046 ~ 26457756 (+) False G13823
XM_022675621.1 mRNA upstream 174579 25816743 ~ 25829067 (+) True mindy4b
XM_007236771.3 mRNA upstream 195154 25801597 ~ 25808492 (+) True clrn1
XM_007236772.3 mRNA upstream 196726 25801597 ~ 25806920 (+) False clrn1
XM_007236770.3 mRNA upstream 208996 25788584 ~ 25794650 (+) True LOC103023549
XM_007236769.3 mRNA upstream 220599 25774797 ~ 25783047 (+) True LOC103023233
XM_022675689.1 mRNA downstream 490873 26497552 ~ 26675015 (+) True dscaml1
XM_022675694.1 mRNA downstream 490873 26497552 ~ 26675015 (+) False dscaml1
XM_022675691.1 mRNA downstream 490874 26497553 ~ 26675015 (+) False dscaml1
XM_007237662.3 mRNA downstream 694880 26701559 ~ 26708772 (+) True LOC103037665
XM_022675737.1 mRNA downstream 952705 26959384 ~ 26964690 (+) True pgam5
TU18257 other upstream 330457 25668748 ~ 25673189 (+) False mfrp
TU18064 other upstream 947543 25052513 ~ 25056103 (+) True G13445
TU17784 other upstream 1146624 24855933 ~ 24857022 (+) True G13237
TU17745 other upstream 1286420 24714351 ~ 24717226 (+) False ccdc9
TU18843 other downstream 1002869 27009548 ~ 27040529 (+) True G14047
TU19049 other downstream 2043450 28050129 ~ 28056900 (+) False LOC103031366
TU19373 other downstream 3122388 29129067 ~ 29129373 (+) True G14444
TU19421 other downstream 3388481 29395160 ~ 29398166 (+) True G14480
TU19448 other downstream 3667495 29674174 ~ 29689149 (+) False nubp1

Expression Profile