RNA id: TU18285


Basic Information

Item Value
RNA id TU18285
length 249
lncRNA type read_through
GC content 0.36
exon number 2
gene id G13612
representative True

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 25727307 ~ 25775610 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATAGCATATTAGACTGGGGATTATAATGTTTTGGTTCATTGGTATGTatagtatacacacacagctctggaacaaaataagagaccactcaaaataatgagtttctttgattttacctaattgaaaacctctggaataaaatcaagaggaagatggatgatcacaagccatcaaaccaaactgaactgcttgaattcttgcaccaggagtgagtggcatacagttatccaaaagaagtgtgtaagactg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU18274 lncRNA upstream 23357 25699497 ~ 25703950 (+) True G13607
TU18275 lncRNA upstream 23357 25699497 ~ 25703950 (+) False G13607
TU18276 lncRNA upstream 25302 25699497 ~ 25702005 (+) False G13607
TU18246 lncRNA upstream 82944 25644013 ~ 25644363 (+) True G13589
TU18231 lncRNA upstream 84564 25603332 ~ 25642743 (+) False LOC103045399
TU18389 lncRNA downstream 18910 25794520 ~ 25795084 (+) False LOC103023549
XR_002650999.1 lncRNA downstream 132131 25907741 ~ 25908666 (+) True LOC111194239
TU18438 lncRNA downstream 228036 26003646 ~ 26006679 (+) True G13733
TU18543 lncRNA downstream 673657 26449267 ~ 26449469 (+) True G13822
TU18544 lncRNA downstream 673911 26449521 ~ 26450382 (+) False G13823
XM_007236766.3 mRNA upstream 5640 25704997 ~ 25721667 (+) True LOC103022406
XM_007236767.3 mRNA upstream 6582 25704994 ~ 25720725 (+) False LOC103022406
XM_007236764.3 mRNA upstream 28674 25693699 ~ 25698633 (+) True LOC103021785
XM_007236762.3 mRNA upstream 36152 25689054 ~ 25691155 (+) True LOC103047847
XM_007236760.3 mRNA upstream 40664 25680398 ~ 25686643 (+) True LOC103047330
XM_007236770.3 mRNA downstream 12974 25788584 ~ 25794650 (+) True LOC103023549
XM_007236771.3 mRNA downstream 25987 25801597 ~ 25808492 (+) True clrn1
XM_007236772.3 mRNA downstream 25987 25801597 ~ 25806920 (+) False clrn1
XM_022675621.1 mRNA downstream 41133 25816743 ~ 25829067 (+) True mindy4b
XM_022675689.1 mRNA downstream 721942 26497552 ~ 26675015 (+) True dscaml1
TU18257 other upstream 54118 25668748 ~ 25673189 (+) False mfrp
TU18064 other upstream 671204 25052513 ~ 25056103 (+) True G13445
TU17784 other upstream 870285 24855933 ~ 24857022 (+) True G13237
TU17745 other upstream 1010081 24714351 ~ 24717226 (+) False ccdc9
TU18843 other downstream 1233938 27009548 ~ 27040529 (+) True G14047
TU19049 other downstream 2274519 28050129 ~ 28056900 (+) False LOC103031366
TU19373 other downstream 3353457 29129067 ~ 29129373 (+) True G14444
TU19421 other downstream 3619550 29395160 ~ 29398166 (+) True G14480
TU19448 other downstream 3898564 29674174 ~ 29689149 (+) False nubp1

Expression Profile