G13848


Basic Information

Item Value
gene id G13848
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 26526712 ~ 26529638 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU18612
TCAGGGTATGCAAAAACATGTTGGCTTTTATTTTCCCTACATATTGTTTTACaaacaaatgcatttaaaatacatataaagcaCACACTTCAGGCTGAACCtaatacaaaaacatatttcCAGAATAAAGTAAAGTGTTTCTCTTTTGCTTTCTGTAATACATTTTGTGTACCACTGTGAAGGTGTCTCTAGaacaggggtcactaataggcggaccgcggtccgggtccagACCCAGAtgttgtccaatccggacccaaactgataaactactgagaaggatttaattctgaccgtgtTCATTTCAAGTGgcggaacgtttattgtctttatggtttacgtgctttacagtgcagtaaactcacagaccaatcacgtgtgctgtaagatcaccaaacgctctcctctgccaatcagatctgtgcagatgcgagagcgcggagccacacaggcgaagcaggcggtgagaagtgggagaataaagcgagaaaagctaatacagatggtgcgcaccagaaaaaaacattaaaatactacagttataaaacatattaacagtaatgtaacctcgcggtgttacttggaggaattaaagagaaacaaccgaaacaacagtgcaaaatattccactttactccccCTGATCAGAACTCcccagcaagaaaaaaaaagcacgcTCTCTTTGCTCCCAAAccaaccctacctcaaaactaaggcagcccccaggggacaaaaagcattggcaactcccccccatcagttttacccacaacataataaagtaagCTACagtaataatattacataacataaaactactgtttttaaaaaaaatattttggtcaagttcagcaaacatttctccatgtattgtacgatttatcattcatgtaattattattatgacaggcaggcctaaatctaaaataaataaaatcaaatagaataaatatagcattatgaaacaaagtgaacatagagattcacattattagactcgatatgttaaattattgagggtttttccatttattttatgataggttgataatgtaaatattgtgaccggcctatttaaaacaataaataaagttgaaatatactagtatgtgtaatttgttttgtctttcagttgttgacaAAACACTGGCAGAACAactataggcttcttcagtaaacagaataaaacactgaattataacacaagttaacattggtgacggtccggaccttagcctgatgaaattttctctaactggaccaaactgaattctaattaaatacccctgatctAGAATGTTACATTCTGTATTAATCTTGGAAAAACTTTTTAGTGATTTCATTATGCAGAATTTTACCATTAAAAAACGATGTATTATTTCTTCACACAAAGccctacaaacacacatattaatGTTATACACGCTGGATTTTGGTCAGTATTTAATAACATGTTTTACACATGTTCACTCAAGGTACAGAAATAGCCCTGCTGCATTCTCCTAGTTTTGAACTACGCAGGATATCATATAAACCTCATTGGTGTTTTGGGAGCCCTGTTAATCAGCCTAATTCAGTTTGGTCTTTTTAGATGTTTTGCATTTTCTCAGGATAGAGGAGATGATAAAAAAGATGATAAAAAATGGTCATATTAAACAAAATAGAGACAAATGTTTGTGTAAAGGATGGAGAGATGTAAAGTATTGGTAGTATgcatt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU18612 True 1718 lncRNA 0.36 2 26526712 26529638

Neighbor

gene id symbol gene type direction distance location
mindy4b fam188b2,LOC107598659 coding upstream 697645 25816743 ~ 25829067 (+)
clrn1 clrn1 coding upstream 718220 25801597 ~ 25808492 (+)
LOC103023233 NA coding upstream 743665 25774795 ~ 25783047 (+)
LOC103022923 LOC103022923,LOC108426899 coding upstream 760927 25748629 ~ 25765785 (+)
LOC103031763 NA coding upstream 785049 25732877 ~ 25741663 (+)
LOC103037665 NA coding downstream 171921 26701559 ~ 26708772 (+)
pgam5 pgam5 coding downstream 429746 26959384 ~ 26964690 (+)
LOC107197223 NA coding downstream 530507 27060145 ~ 27103854 (+)
LOC111194302 NA coding downstream 574394 27104032 ~ 27112068 (+)
eef2kmt eef2kmt coding downstream 1043914 27573552 ~ 27578060 (+)
G13842 NA non-coding upstream 30291 26496219 ~ 26496421 (+)
G13838 NA non-coding upstream 42145 26483717 ~ 26484567 (+)
G13829 NA non-coding upstream 46822 26468757 ~ 26479890 (+)
G13828 NA non-coding upstream 58140 26457994 ~ 26468572 (+)
G13823 NA non-coding upstream 68956 26449521 ~ 26457756 (+)
G13852 NA non-coding downstream 11875 26541513 ~ 26542017 (+)
G13844 NA non-coding downstream 150165 26679803 ~ 26738117 (+)
G13899 NA non-coding downstream 239653 26769291 ~ 26848940 (+)
G13904 NA non-coding downstream 252258 26781896 ~ 26782551 (+)
G13908 NA non-coding downstream 290053 26819691 ~ 26823273 (+)
LOC103023549 gpr171 other upstream 731628 25788584 ~ 25795084 (+)
mfrp mfrp other upstream 853476 25660898 ~ 25673236 (+)
LOC103045399 LOC108426937,LOC108277812 other upstream 883969 25561633 ~ 25642743 (+)
LOC103040166 LOC103040166,LOC108426893 other upstream 1187277 25246996 ~ 25339435 (+)
G13445 spcs2,LOC107677086 other upstream 1470609 25052513 ~ 25056103 (+)
G14047 NA other downstream 479910 27009548 ~ 27040529 (+)
LOC103031366 LOC105899914 other downstream 1520491 28050129 ~ 28077818 (+)
rbfox1 rbfox1 other downstream 1582408 28112046 ~ 28607089 (+)
G14444 NA other downstream 2599429 29129067 ~ 29129373 (+)
G14480 NA other downstream 2865522 29395160 ~ 29398166 (+)

Expression


Co-expression Network