LOC111193555


Basic Information

Item Value
gene id LOC111193555
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 20884548 ~ 20886467 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022674881.1
tcgaataattgaaaaaatttatatcagattagtcaacttccaaaataatcattagttgcagccctagtgagCACTGGCCAGTTGGTGGTGCTATGTCCACAACCAAATTTTATCAAGAAAATGTTTCGCCTAGAACATGCTTCATATTAATGAGCTAGATATTaagagtttatttgttttttagttttttttgtttaatatataacaattctatttttttttatttctactaaTATTGCTACAGTGTGGATCACATTCAATCTAGTGACCAAAACCTAATTTggatttcaaatgaaaaataaagaatacagaAAAAGACATGGATCGTCAGCTTTTTAAACTGAAGTTACACAGTAATGAAATAATGGGGGGCAAGAAGTTGCTtaaatgttttaaggaaaaataTCCATTTCATATTATAATTTGCTTTCATATTAATTTTAggtgtgtatttatattttcagtctttataataaagaacaataaagGAATCTATAACTCAGCTAAATGTTTAGTACCAAGAATGTCactaatctaaaataaaatgatagtGTAATTGCTTTAATCTTACATTTCTTccattttattttctcatttaatgGTTAATACTTATAACACCAATCCTGTCTGTATGCTATTTTTATAAGTAAAGCACCATAGGCAACGTCTTATCGCCAAGGGTCTTTTAgaacagtataaatacaccagCTATAGGACCGTGCCCAGTGAGACTGAGGCTGCTGTTTTTTCATTGTGTCTCATATACTaaagtctctttttttcagtgggATTGATTGCTCATAtaatctgttttacataaattatactgtctttgtacttttttctattttcagaAATGCAGAACtcaggtaataataataataccctaAACATTAACTTTTCAAGAATTTTCATGCAGAAAGTGATGATGGTGCAGATTCTGGTGGGGATTTTCCTGTATGTGAACTGTTTGATGATATTTACCTTTCTAAAAAAGGAGATTTTTCGAGAGGACACTCGGTACATACTGTTCGCACAGACTCTATTGGTTGATTCGGTTTTATTGGTGTTGAGTGATGTGATGTTGATCTGGAATACTTACCTGTACCCTATCCACATGATTCCTTGTATTATCATCTGTACATTTGTAACTGTTCTCACCACTTGCACTCCACTGACTCTTGTGGCGATGTGTCTGGAGCGCTATGTTGCTATATGCATGCCTTTGAGACATGCAGACATCTCCACCAGCAGGACCAGATTACTTGGACTTCTTATCATATGGAGTCTCAGCTGCATAGCTCCTCTGTTCACTTTTGTAGCGTTTCTTGCTGTGGTCCACCCTGGTGCTCTGTTCTCCTCTGCGGTTTGTACTGTGGAGATATTATATGAGCAGGACTGGCAGGCACAAATGCGTATTGTAATTTTGCAGCTCCTTTTTCTTACTATGACCCTCATCATTGTCTTCACCTACATCAAAATTATGATTGCAGCCAGAGCTGCTTCCACGGATAAAAAGAAATCGACCAATAAGAGTCTCAGAACTGTGATCCTTCATGCCTTTCAGTTGTTTCTGTGtataatgcagtttttaaacccATATATTGAAATTGTATTCTTAAAGCTAGATATATCTGTATATGGTCAGTTGAGATATgctaattttgttatttttatcattGCGCCACGTTGCTTAAGCCCACTGATTTATGGACTGAGAGATGAAAAGTTTTtccatgttttaaaacattatgcttTGTTTGGTTTTGATACATTTTTCTCAGGATTGTTCAATAAGTGGAAAGTAAGACCTATTGAAACTAAAGCTTTGTGAAATATATCGTTTTTTACTATTAATGCTACAAATAATAATGCTTTCCTGCTCATCTATGGAAATCAATAAATCAGTGTTTGACATGA

Function

GO:

id name namespace
GO:0030031 cell projection assembly biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022674881.1 True 1920 mRNA 0.34 1 20884548 20886467

Neighbor

gene id symbol gene type direction distance location
LOC111193556 NA coding upstream 5517 20876909 ~ 20879031 (+)
LOC103032051 NA coding upstream 10429 20872316 ~ 20874119 (+)
LOC103032372 zbtb16b,LOC108435307,LOC108278332,LOC107699906,LOC107597519,LOC107701406,LOC107713452,LOC107582577,LOC107748597 coding upstream 40427 20746029 ~ 20844121 (+)
LOC103035031 LOC108435305 coding upstream 152839 20522878 ~ 20731709 (+)
LOC103025662 arhgap32,LOC108435303 coding upstream 869126 19952453 ~ 20015422 (+)
pih1d2 NA coding downstream 15809 20902276 ~ 20908807 (+)
LOC103030893 arcn1,LOC108436511,LOC108278096 coding downstream 64876 20951343 ~ 20960236 (+)
LOC103033418 ubash3bb,LOC108436514,LOC108278382,LOC107709118,LOC107586242,LOC107601707,LOC107677523 coding downstream 107639 20994106 ~ 21053855 (+)
nkapd1 LOC103031305 coding downstream 657889 21544356 ~ 21549087 (+)
LOC103031614 ppp2r1b,LOC104918016 coding downstream 688483 21574950 ~ 21597352 (+)
G12038 NA non-coding upstream 117149 20727543 ~ 20767399 (+)
G12039 NA non-coding upstream 129268 20728643 ~ 20755280 (+)
G12034 NA non-coding upstream 173870 20671034 ~ 20710678 (+)
G12027 NA non-coding upstream 264571 20562773 ~ 20619977 (+)
G12023 NA non-coding upstream 355111 20529047 ~ 20529437 (+)
G12165 NA non-coding downstream 105403 20991870 ~ 20992084 (+)
LOC103030577 NA non-coding downstream 170286 21056753 ~ 21162746 (+)
G12187 NA non-coding downstream 227388 21113855 ~ 21116020 (+)
G12242 NA non-coding downstream 284638 21171105 ~ 21171318 (+)
G12297 NA non-coding downstream 377460 21263927 ~ 21309318 (+)
LOC103043893 picalmb,LOC108435293,LOC107726102,LOC107662770,LOC107597534,LOC107729110,LOC107699893,LOC108278317,LOC105903807 other upstream 1439717 19412807 ~ 19444831 (+)
LOC111194200 NA other upstream 3741200 17139425 ~ 17143348 (+)
ccdc47 ccdc47,LOC107674171,LOC107658463,LOC107729550,LOC107721963 other upstream 4583881 16224721 ~ 16300667 (+)
ddx42 ddx42 other upstream 4849264 16011694 ~ 16035284 (+)
G10879 NA other upstream 4924170 15952846 ~ 15960378 (+)
LOC103033739 gkup,LOC108436512,LOC108278261,LOC106612544,LOC105024033,LOC107709108,LOC107717281,LOC107657260,LOC107586304 other downstream 76582 20963049 ~ 20990064 (+)
trnan-guu NA other downstream 89737 20976204 ~ 20976277 (+)
G12362 bco2b,LOC108436497,LOC107586303,LOC107657247 other downstream 573383 21459850 ~ 21463649 (+)
spa17 spa17,LOC107709112,LOC107586300,LOC107657238,LOC107717271 other downstream 1414529 22300996 ~ 22384972 (+)
oaf oaf,oafa,LOC107696006,LOC107709135,LOC107586231,LOC107657251,LOC107717291 other downstream 1587185 22473652 ~ 22517780 (+)

Expression


Co-expression Network