LOC103030577


Basic Information

Item Value
gene id LOC103030577
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 21056753 ~ 21162746 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU16398
caatctggcaaccgtGACGTCACACCGCCGCAAAATCACCGAGAAAAGCCGGAGAGCAGATCGGAGAAGAGCAGGAATAAGTGGTTTGCAATGCTGTCCCAAATGGAAGCTGCACAGGAAGAGCTGGAAAAGCTGTTACTGACGTTATCCTGCTCTCAACAGAAGCAGATTTCCAGCTGGAGCCGAGCGGAGCGATCAAACGCCCTTTTGTGACCGCGCTGAGAGAGAAGAGTCAGG
>XR_002650607.1
GAAATAGCtgtcatgtttttttgggtggttttctttgcattttggcGGATCTAAAACACGTTTAACCCAATGACTTTTTACCTGATATTTTTTACCTGGACGCCtatgtaacaatctggcaaccgtGACGTCACACCGCCGCAAAATCACCGAGAAAAGCCGGAGAGCAGATCGGAGAAGAGCAGGAATAAGTGGTTTGCAATGCTGTCCCAAATGGAAGCTGCACAGGAAGAGCTGGAAAAGCTGTTACTGACGTTATCCTGCTCTCAACAGAAGCAGATTTCCAGCTGGAGCCGAGCGGAGCGATCAAACGCCCTTTTGTGACCGCGCTGAGAGAGAAGAGTCAGGGGCTGTTCGAGAATTACATTAGAGCTTCGGTTAACACCTAATGATGCAGTTAAGAATGGaCAGGCAGCACTGAGGAACCTTCAGGCTTGAATCCTGAGGAGGAGAGGACTGAATGCAGGTAAGTGTAGACCCCCCCTCCCCTAAACACCCCAAACCAATATCCTTGAGCCCTGAGCTAAAGAGCAATTCTATTAAAAGTAGTTCGGCCCAAGGTCAGAGTAAAATTGGTGTGTGTCTGCGTGCCTGTAAAAGGTTTTGGTgctggttttgttttgttttctgagaTTTTTGTTATTGTGGCATTGTGTGGGATGAAGCTGGAGCAGCTGAACCTTGACTGAACAGAGCACAACTTCCTGAAACCACAGGGCATCACATTTTGTCGGAAGGTCACTTGTTCTTTTTGAGCAGAAACtcgaaaaaataaataaataaagcacaatAATGGAAAAGCATCACATATAATTAGTgaaggtctgtcacaataattatgtcTTTTAATTATTGACTTATTAAACAAATTATGTACATAACCTCTAAGGCTGTGTATTAGGAGGAACTTAGTGTTGGTATGTATCAAGGGTTACAACACAGTTCataacagtatacagtatatga

Function

GO:

id name namespace
GO:0090304 nucleic acid metabolic process biological_process
GO:0006974 cellular response to DNA damage stimulus biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:0044237 cellular metabolic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0033554 cellular response to stress biological_process
GO:0006259 DNA metabolic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0006281 DNA repair biological_process

KEGG:

id description
ko03420 Nucleotide excision repair
ko03460 Fanconi anemia pathway

RNA

RNA id representative length rna type GC content exon number start site end site
TU16398 False 237 lncRNA 0.43 3 21056864 21089666
XR_002650607.1 True 966 lncRNA 0.43 5 21056753 21162746

Neighbor

gene id symbol gene type direction distance location
LOC103033418 ubash3bb,LOC108436514,LOC108278382,LOC107709118,LOC107586242,LOC107601707,LOC107677523 coding upstream 2898 20994106 ~ 21053855 (+)
LOC103030893 arcn1,LOC108436511,LOC108278096 coding upstream 96517 20951343 ~ 20960236 (+)
pih1d2 NA coding upstream 147946 20902276 ~ 20908807 (+)
LOC111193555 NA coding upstream 170286 20884548 ~ 20886467 (+)
LOC111193556 NA coding upstream 177722 20876909 ~ 20879031 (+)
nkapd1 LOC103031305 coding downstream 381610 21544356 ~ 21549087 (+)
LOC103031614 ppp2r1b,LOC104918016 coding downstream 412204 21574950 ~ 21597352 (+)
LOC111194279 NA coding downstream 602212 21764958 ~ 21827382 (+)
ttc12 NA coding downstream 682019 21844765 ~ 21905395 (+)
LOC111194280 NA coding downstream 756472 21919218 ~ 21931304 (+)
G12165 NA non-coding upstream 64669 20991870 ~ 20992084 (+)
G12038 NA non-coding upstream 289354 20727543 ~ 20767399 (+)
G12039 NA non-coding upstream 301473 20728643 ~ 20755280 (+)
G12034 NA non-coding upstream 346075 20671034 ~ 20710678 (+)
G12027 NA non-coding upstream 436776 20562773 ~ 20619977 (+)
G12242 NA non-coding downstream 8359 21171105 ~ 21171318 (+)
G12297 NA non-coding downstream 101181 21263927 ~ 21309318 (+)
G12307 NA non-coding downstream 149910 21312656 ~ 21313513 (+)
G12325 NA non-coding downstream 159292 21322038 ~ 21323725 (+)
G12328 NA non-coding downstream 163664 21326410 ~ 21327031 (+)
LOC103033739 gkup,LOC108436512,LOC108278261,LOC106612544,LOC105024033,LOC107709108,LOC107717281,LOC107657260,LOC107586304 other upstream 66689 20963049 ~ 20990064 (+)
trnan-guu NA other upstream 80476 20976204 ~ 20976277 (+)
LOC103043893 picalmb,LOC108435293,LOC107726102,LOC107662770,LOC107597534,LOC107729110,LOC107699893,LOC108278317,LOC105903807 other upstream 1611922 19412807 ~ 19444831 (+)
LOC111194200 NA other upstream 3913405 17139425 ~ 17143348 (+)
ccdc47 ccdc47,LOC107674171,LOC107658463,LOC107729550,LOC107721963 other upstream 4756086 16224721 ~ 16300667 (+)
G12362 bco2b,LOC108436497,LOC107586303,LOC107657247 other downstream 297104 21459850 ~ 21463649 (+)
spa17 spa17,LOC107709112,LOC107586300,LOC107657238,LOC107717271 other downstream 1138250 22300996 ~ 22384972 (+)
oaf oaf,oafa,LOC107696006,LOC107709135,LOC107586231,LOC107657251,LOC107717291 other downstream 1310906 22473652 ~ 22517780 (+)
G13067 NA other downstream 2691252 23853998 ~ 23855353 (+)
ccdc9 ccdc9,LOC107548566,LOC107664938 other downstream 3538096 24700842 ~ 24722676 (+)

Expression


Co-expression Network