G12325


Basic Information

Item Value
gene id G12325
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 21322038 ~ 21323725 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU16565
cttgatggtaaagctgcatgagcgggggttcgaacctgcaacctcccgctcatagtggcagcgcattagacagCTGGACCACTCGACGCCTCGTACTTCATTGATTCATAAATTGAAATTTGCATTTTAGACCTCTATTTGTTTTGTGTCTTCACATGATTTGCCTTTATTTCATTGtctacttaaaataaatatatgtata

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU16565 True 202 lncRNA 0.35 2 21322038 21323725

Neighbor

gene id symbol gene type direction distance location
LOC103033418 ubash3bb,LOC108436514,LOC108278382,LOC107709118,LOC107586242,LOC107601707,LOC107677523 coding upstream 268183 20994106 ~ 21053855 (+)
LOC103030893 arcn1,LOC108436511,LOC108278096 coding upstream 361802 20951343 ~ 20960236 (+)
pih1d2 NA coding upstream 413231 20902276 ~ 20908807 (+)
LOC111193555 NA coding upstream 435571 20884548 ~ 20886467 (+)
LOC111193556 NA coding upstream 443007 20876909 ~ 20879031 (+)
nkapd1 LOC103031305 coding downstream 220631 21544356 ~ 21549087 (+)
LOC103031614 ppp2r1b,LOC104918016 coding downstream 251225 21574950 ~ 21597352 (+)
LOC111194279 NA coding downstream 441233 21764958 ~ 21827382 (+)
ttc12 NA coding downstream 521040 21844765 ~ 21905395 (+)
LOC111194280 NA coding downstream 595493 21919218 ~ 21931304 (+)
G12307 NA non-coding upstream 8525 21312656 ~ 21313513 (+)
G12297 NA non-coding upstream 12720 21263927 ~ 21309318 (+)
G12242 NA non-coding upstream 150720 21171105 ~ 21171318 (+)
LOC103030577 NA non-coding upstream 159292 21056753 ~ 21162746 (+)
G12187 NA non-coding upstream 206018 21113855 ~ 21116020 (+)
G12328 NA non-coding downstream 2685 21326410 ~ 21327031 (+)
G12369 NA non-coding downstream 147282 21471007 ~ 21471993 (+)
G12370 NA non-coding downstream 148890 21472615 ~ 21475035 (+)
G12373 LOC108436499,LOC108436498 non-coding downstream 159388 21483113 ~ 21519233 (+)
G12379 NA non-coding downstream 176472 21500197 ~ 21531538 (+)
LOC103033739 gkup,LOC108436512,LOC108278261,LOC106612544,LOC105024033,LOC107709108,LOC107717281,LOC107657260,LOC107586304 other upstream 331974 20963049 ~ 20990064 (+)
trnan-guu NA other upstream 345761 20976204 ~ 20976277 (+)
LOC103043893 picalmb,LOC108435293,LOC107726102,LOC107662770,LOC107597534,LOC107729110,LOC107699893,LOC108278317,LOC105903807 other upstream 1877207 19412807 ~ 19444831 (+)
LOC111194200 NA other upstream 4178690 17139425 ~ 17143348 (+)
ccdc47 ccdc47,LOC107674171,LOC107658463,LOC107729550,LOC107721963 other upstream 5021371 16224721 ~ 16300667 (+)
G12362 bco2b,LOC108436497,LOC107586303,LOC107657247 other downstream 136125 21459850 ~ 21463649 (+)
spa17 spa17,LOC107709112,LOC107586300,LOC107657238,LOC107717271 other downstream 977271 22300996 ~ 22384972 (+)
oaf oaf,oafa,LOC107696006,LOC107709135,LOC107586231,LOC107657251,LOC107717291 other downstream 1149927 22473652 ~ 22517780 (+)
G13067 NA other downstream 2530273 23853998 ~ 23855353 (+)
ccdc9 ccdc9,LOC107548566,LOC107664938 other downstream 3377117 24700842 ~ 24722676 (+)

Expression


Co-expression Network