G12379


Basic Information

Item Value
gene id G12379
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 21500197 ~ 21531538 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU16636
tcaagtcaagtcaagtcaagtcattatcaaccgcttcatccattaagggtcgcgggggggtgctggagcctatcccagccggcatcgggcggaaggcaggatacaccctggacaggccgccaatccatcgcagggcagacagacacagacagacacattcactcacacactcacacctaaggggcaatttcaatcaagttccaatcagcctgaacgtgccgtctttggactgtgggaggaaaccggagaacccggaggaaacccacgcagacacggggagaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU16636 True 282 lncRNA 0.40 2 21500197 21531538

Neighbor

gene id symbol gene type direction distance location
LOC103033418 ubash3bb,LOC108436514,LOC108278382,LOC107709118,LOC107586242,LOC107601707,LOC107677523 coding upstream 446342 20994106 ~ 21053855 (+)
LOC103030893 arcn1,LOC108436511,LOC108278096 coding upstream 539961 20951343 ~ 20960236 (+)
pih1d2 NA coding upstream 591390 20902276 ~ 20908807 (+)
LOC111193555 NA coding upstream 613730 20884548 ~ 20886467 (+)
LOC111193556 NA coding upstream 621166 20876909 ~ 20879031 (+)
nkapd1 LOC103031305 coding downstream 12818 21544356 ~ 21549087 (+)
LOC103031614 ppp2r1b,LOC104918016 coding downstream 43412 21574950 ~ 21597352 (+)
LOC111194279 NA coding downstream 233420 21764958 ~ 21827382 (+)
ttc12 NA coding downstream 313227 21844765 ~ 21905395 (+)
LOC111194280 NA coding downstream 387680 21919218 ~ 21931304 (+)
G12370 NA non-coding upstream 25162 21472615 ~ 21475035 (+)
G12369 NA non-coding upstream 28204 21471007 ~ 21471993 (+)
G12328 NA non-coding upstream 173166 21326410 ~ 21327031 (+)
G12325 NA non-coding upstream 176472 21322038 ~ 21323725 (+)
G12307 NA non-coding upstream 186684 21312656 ~ 21313513 (+)
G12410 NA non-coding downstream 78634 21610172 ~ 21613000 (+)
G12414 sik2b,LOC108436519,LOC108277697,LOC107657230,LOC107717286 non-coding downstream 91090 21622628 ~ 21623561 (+)
G12421 NA non-coding downstream 116814 21648352 ~ 21648643 (+)
G12424 NA non-coding downstream 148302 21679840 ~ 21716389 (+)
G12428 NA non-coding downstream 153819 21685357 ~ 21685942 (+)
G12362 bco2b,LOC108436497,LOC107586303,LOC107657247 other upstream 36548 21459850 ~ 21463649 (+)
LOC103033739 gkup,LOC108436512,LOC108278261,LOC106612544,LOC105024033,LOC107709108,LOC107717281,LOC107657260,LOC107586304 other upstream 510133 20963049 ~ 20990064 (+)
trnan-guu NA other upstream 523920 20976204 ~ 20976277 (+)
LOC103043893 picalmb,LOC108435293,LOC107726102,LOC107662770,LOC107597534,LOC107729110,LOC107699893,LOC108278317,LOC105903807 other upstream 2055366 19412807 ~ 19444831 (+)
LOC111194200 NA other upstream 4356849 17139425 ~ 17143348 (+)
spa17 spa17,LOC107709112,LOC107586300,LOC107657238,LOC107717271 other downstream 769458 22300996 ~ 22384972 (+)
oaf oaf,oafa,LOC107696006,LOC107709135,LOC107586231,LOC107657251,LOC107717291 other downstream 942114 22473652 ~ 22517780 (+)
G13067 NA other downstream 2322460 23853998 ~ 23855353 (+)
ccdc9 ccdc9,LOC107548566,LOC107664938 other downstream 3169304 24700842 ~ 24722676 (+)
G13237 NA other downstream 3324395 24855933 ~ 24857022 (+)

Expression


Co-expression Network