G12373 (LOC108436499,LOC108436498)


Basic Information

Item Value
gene id G12373
gene name LOC108436499,LOC108436498
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 21483113 ~ 21519233 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU16628
taaacTTGAGACTTCTCATGggtttattcagattttaaagtaaaattggTACATTAATTACTTTATGACAAAGCGTCAAAAAGTAGTTTCAGCTTTTTTGTTTGACTGACAGCAACATGTCAAGCATTTTAAGTATGTTTAAAGTTGCACTGTTTAGGACAAATAGCCATTTTTAAGTAGATATTTAAAGTCTGTCACTTTCTAACAAGTTCTCTTCAATTCAAAtgaacaaatatattaaatataatgactCAAAGCAAAGAACATATGagtatttaaaaaagcataaacTGTAAATAGAGGGTCTTCAAACAGCAGTAACGTGTGTGGGAAGTTGTATTATGTAAATCCACAGACAGATTAAACTATTATAACAATTACAGTATCtgcccaaaaaagaaaaaaaaaaaaaaacatgtgaatgtcaatgtaaaaacggtgtttttatttattaggtgattttggagaatttctatttgtCCATTCTTTAGGAAATGTTAACCAAGTGTATGTGACACTGTATGtgttcaaatgatgtagtaaactaaagaATTGTCAAAAATTGAGATGTgacaaaataattattactaAAAATAATTTCTAGAAAACCAATCAGCAGAACATGACAGATTGTAGAACACTTGAAAAACAAAGCTTTACTTATTCTGTGTATTCGTGTAAATCAGTAAAATTAACAGTACCTAATTGTTTACATTAAGAACACATCATTGATTGGTGCACAAGTTTCAAGTTGAATAGTctataaaataacaattaataatGGCAACTtaacataataatttaaacCATTTTCCATTCACAATTATTATATAGCACCAATAGCTCACAAAAATTAACACGGGATCTTGTTTTTATCCATACTCAATCAATACTATTAATGTTCTTAGCAGCTCTGAGAGCAGACTTCATGGCCGTCTCAATCCAGCCGTGTGGCATGGCTGTGTGCTCTCCAGCGAAATGAATCCTCCCCTCTTTCTGGAACAGATCTTTAGAGTAGTGACTCTCCTGGTAGGGAGTGAAGATGGCGAACGCTCCATGGCTGTAAGGATCCAGAGACCATTTCTTTACAACACCTCCAGTACAGAGCTGCCGGATCCCCTCCCCATGGATCTTCACCAAGTCATTAAGCACCATGGCCATCAGCTCATCATCCGGCACCCCCTGGAAGAGCGTGGAATCATCAGAGCAGGTGTATGAAGCCAAAAGGGCGCCCCCTGTTCCAGGAAAGCTGTGGCTGGGGTAGTAAATGAAGCGTGAAGGCATATCTGTGATGCTTCTTCCACCCTTGATGCCTTGTTTCTCCCAGAACCTCTCACTGAAGCTCAGCACGACCTTGGTGGAGCTGGCGTAGTGCACCGAGCGCAGAGCCTCCATCTTCCGGACTGATAGCGGAGGCTGGAAATCAATGAAGAGTGAAGCTTTGGCTGTAGCCGTCACCAGAACGTAGTCGAAAGTGAAGTTGGTCAAAGCGGAGAGGTTTCGCCAGTCTTGAAATGAAACCGTCACATTACTCTCGGTTTGAGTGATGCGTTTGACCTTTGATCTGAGCAGAATTGTCGCATTGAGTACTTCATAAAATTTTCTGGGTATGTGATCCATGCCA
>TU16630
taaacTTGAGACTTCTCATGggtttattcagattttaaagtaaaattggTACATTAATTACTTTATGACAAAGCGTCAAAAAGTAGTTTCAGCTTTTTTGTTTGACTGACAGCAACATGTCAAGCATTTTAAGTATGTTTAAAGTTGCACTGTTTAGGACAAATAGCCATTTTTAAGTAGATATTTAAAGTCTGTCACTTTCTAACAAGTTCTCTTCAATTCAAAtgaacaaatatattaaatataatgactCAAAGCAAAGAACATATGagtatttaaaaaagcataaacTGTAAATAGAGGGTCTTCAAACAGCAGTAACGTGTGTGGGAAGTTGTATTATGTAAATCCACAGACAGATTAAACTATTATAACAATTACAGTATCtgcccaaaaaagaaaaaaaaaaaaaaacatgtgaatgtcaatgtaaaaacggtgtttttatttattaggtgattttggagaatttctatttgtCCATTCTTTAGGAAATGTTAACCAAGTGTATGTGACACTGTATGtgttcaaatgatgtagtaaactaaagaATTGTCAAAAATTGAGATGTgacaaaataattattactaAAAATAATTTCTAGAAAACCAATCAGCAGAACATGACAGATTGTAGAACACTTGAAAAACAAAGCTTTACTTATTCTGTGTATTCGTGTAAATCAGTAAAATTAACAGTACCTAATTGTTTACATTAAGAACACATCATTGATTGGTGCACAAGTTTCAAGTTGAATAGTctataaaataacaattaataatGGCAACTtaacataataatttaaacCATTTTCCATTCACAATTATTATATAGCACCAATAGCTCACAAAAATTAACACGGGATCTTGTTTTTATCCATACTCAATCAATACTATTAATGTTCTTAGCAGCTCTGAGAGCAGACTTCATGGCCGTCTCGATCCAGCCGTGTGGCATGGCTGTGTGTTCTCCAGCGAAATGAATCCTCCCCTCTTTCTGGAACAGATCTTTAGAGTAGTGACTCTGCTGGTAGGGAGTGTAGATGGCGAACGCTCCATGGCTGTAAGGATCCAACGCCCATTTCTTTACAACACCTCCAATGTGAAGCTTTCGGATCCCCTCCCCATGGATCTTCACCAAGTCATTCATTACCATGGCCATCAGCTCATCATCCGGCACCCCCTGGAAGAGCGTGGAATCATCAGAGCAGGTGTATGAAGCCAAAAGGGCGCCCCCTGCTCCAGGAAAGCTGTGGCTGGGGTAGTAAATGAAGCGTGATGGCATATCTGTGATGCTTCTTCCTCCCTTGATGCCTTGTTTCTCCCAGAACCTCTCACTGAAGCTCAGCACGACCTTGGTGGAGCTGGCGTAGTGCACCGAGCGCAGAGCCTCCATCTTCCGGACTGATAGCGGAGGCTGGAAATCAATGAAGAGTGAAGCTTTGGCTGTAGCCGTCACCAGAACGTAGTCGAAAGTGAGGTTGGTTAAAGCGTAGAGGTTTTGGCGGTCTTGATATGAAACTGTCACGTAGTGGTCAGTCTGTCTAATGCGTTTGACATTTGATGTAAAATGAATTGTTGCACTGTTGAGTTTCTCATGCAGTTTTTTGGGTATGTGATCCATGCCACCTGAGATTTCATAATAT

Function

NR:

description
PREDICTED: L-amino-acid oxidase-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU16628 False 1624 lncRNA 0.38 3 21483113 21498147
TU16630 True 1645 lncRNA 0.51 3 21483113 21519233

Neighbor

gene id symbol gene type direction distance location
LOC103033418 ubash3bb,LOC108436514,LOC108278382,LOC107709118,LOC107586242,LOC107601707,LOC107677523 coding upstream 429258 20994106 ~ 21053855 (+)
LOC103030893 arcn1,LOC108436511,LOC108278096 coding upstream 522877 20951343 ~ 20960236 (+)
pih1d2 NA coding upstream 574306 20902276 ~ 20908807 (+)
LOC111193555 NA coding upstream 596646 20884548 ~ 20886467 (+)
LOC111193556 NA coding upstream 604082 20876909 ~ 20879031 (+)
nkapd1 LOC103031305 coding downstream 25123 21544356 ~ 21549087 (+)
LOC103031614 ppp2r1b,LOC104918016 coding downstream 55717 21574950 ~ 21597352 (+)
LOC111194279 NA coding downstream 245725 21764958 ~ 21827382 (+)
ttc12 NA coding downstream 325532 21844765 ~ 21905395 (+)
LOC111194280 NA coding downstream 399985 21919218 ~ 21931304 (+)
G12370 NA non-coding upstream 8078 21472615 ~ 21475035 (+)
G12369 NA non-coding upstream 11120 21471007 ~ 21471993 (+)
G12328 NA non-coding upstream 156082 21326410 ~ 21327031 (+)
G12325 NA non-coding upstream 159388 21322038 ~ 21323725 (+)
G12307 NA non-coding upstream 169600 21312656 ~ 21313513 (+)
G12410 NA non-coding downstream 90939 21610172 ~ 21613000 (+)
G12414 sik2b,LOC108436519,LOC108277697,LOC107657230,LOC107717286 non-coding downstream 103395 21622628 ~ 21623561 (+)
G12421 NA non-coding downstream 129119 21648352 ~ 21648643 (+)
G12424 NA non-coding downstream 160607 21679840 ~ 21716389 (+)
G12428 NA non-coding downstream 166124 21685357 ~ 21685942 (+)
G12362 bco2b,LOC108436497,LOC107586303,LOC107657247 other upstream 19464 21459850 ~ 21463649 (+)
LOC103033739 gkup,LOC108436512,LOC108278261,LOC106612544,LOC105024033,LOC107709108,LOC107717281,LOC107657260,LOC107586304 other upstream 493049 20963049 ~ 20990064 (+)
trnan-guu NA other upstream 506836 20976204 ~ 20976277 (+)
LOC103043893 picalmb,LOC108435293,LOC107726102,LOC107662770,LOC107597534,LOC107729110,LOC107699893,LOC108278317,LOC105903807 other upstream 2038282 19412807 ~ 19444831 (+)
LOC111194200 NA other upstream 4339765 17139425 ~ 17143348 (+)
spa17 spa17,LOC107709112,LOC107586300,LOC107657238,LOC107717271 other downstream 781763 22300996 ~ 22384972 (+)
oaf oaf,oafa,LOC107696006,LOC107709135,LOC107586231,LOC107657251,LOC107717291 other downstream 954419 22473652 ~ 22517780 (+)
G13067 NA other downstream 2334765 23853998 ~ 23855353 (+)
ccdc9 ccdc9,LOC107548566,LOC107664938 other downstream 3181609 24700842 ~ 24722676 (+)
G13237 NA other downstream 3336700 24855933 ~ 24857022 (+)

Expression


Co-expression Network