LOC103032051


Basic Information

Item Value
gene id LOC103032051
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 20872316 ~ 20874119 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_015600778.2
GAGATATGAACTGTGTGAAATTTCCCTTTGATACAAACAGCTTAAAATTTGTCCCCTTATGGCctatatggccctaaaataatatcaacatATATCAagcaatattcaaaaatattagcAATATTACTGTGTATGAGGGATGTACTTACTATTGAGATTACTATCTGATCTCAATACGgcaaacataataaaaacagtccattaaagtGCAACTCAAATTAAATCCTGGTAATTTAACCCAGTTTTGCCTGTTGTTCCTTTTGTTTAACCCATACTGGAGTCACAGCTCTCCTTATATGgagtgaaaagaaaaatatttgaatatctcTTAGTTTTAGTGTGTTGACAAAATTGCAGATGCACACTATGAGTTATTCTTGAGTTCATCTTTTAAATTAAGGCCTGATTCACAGTATTACAGTAATTGTCATTATTTGTAGAGATAAATTGTACCTGTTCATATATGTTAACAGGTTCTGTATAAAAAATGCTTAATTATGCATCATTACATATTATTAATTTCAGAATTAAAATAGGTGCTACACAATTGATTACACATCATGTAGGCTCCACCTCATTACCCGAACTGCgtctttaaaaacaatataaatgctAAGCAATGCTTTGATTGTGTAGATTTTTTATGTTCACTGTAACATAACTTTTTCTgatctttattttttcacctgtaaaggtttttctttctattattCTATCACTTTTTGTTTTAGAAATGCAGAGACTTCAAGTTAATATCAGTTCAAGTGGAAACCTGACAACAGAACCAGTTGTGAAGATGATAGTACTGCAGGTGCTGGTTGGGATTTTTCTTTATGTGAACTGTCTGATGATATTCACCTTTCTGAAAAAGGAGGTGTTCAGGGGAGACACTCGCTACATATTATTTGCACAGACGTTATTTGTTGATTCTGCAGTCTTGTTTTTAACTGATGTGATGTTGCTTATGACTGCTTTCCAGGTTCGGATTCATATGATTTCTTGTATAATCGTGTCTGTAGTTGTGGCTGTTCTGAAGAGTTGTACTCCTATGACTCTTGTGGCGATGTGTCTGGAGCGCTATGTTGCTATATGCATGCCTTTAAGACATGCAGACATCTCTTCCAGCAGCAGGATCAGATTCTTTGGATTTCTTATCATTTGGACTATCAGCTCTATTACTGCACTGTTCACTTTTGTAACATATATCTCTGTGGCCCCCCCAAGTTCACTGTCCTTAAATGTTGTTTGTTCTATAGAGCTAATGTTAGATCAGGAGTGGCAGGCTCAAGCACGTGCTATTATGCTGCTGACATTTTTTCTGCTGATGATTTCTGTCATAATCTTTACCTATATCAAGATAATGATTGCAGCCAGAGCTGCCTCGTCTGAGAAAAAGAAATCAACCAGCAAGTGTCTCAGAACTGTGCTCCTCCATGGCTTTCAGATGTTTTTGTGTATAGTTCAGTTTATAACTCCTTATATAGAAATGCCATTGTGGAAGTTAGATATCATAGTATTTACTAATGTAAGATACTCtaattttatcatgtttattatTGTGCCACGATGTCTCAGTCCACTGATTTATGGTCTTAGGGATGAAAAGTTTTTTGCTGTCTTAAGACATTATGCTGTTTGTGGTTTGACAGGCTTTTTACAAATTCAGCCAGCCAACAAAAAATAAGTCCTAGCTgtatcatagtttttttttatgtgctttttCATCCAGTGtctttaattgtaataaaaagcAATATTGTACTTTAAAGCAACTAAAACCCTGGTTATACATATCAGATCATGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_015600778.2 True 1804 mRNA 0.35 1 20872316 20874119

Neighbor

gene id symbol gene type direction distance location
LOC103032372 zbtb16b,LOC108435307,LOC108278332,LOC107699906,LOC107597519,LOC107701406,LOC107713452,LOC107582577,LOC107748597 coding upstream 28195 20746029 ~ 20844121 (+)
LOC103035031 LOC108435305 coding upstream 140607 20522878 ~ 20731709 (+)
LOC103025662 arhgap32,LOC108435303 coding upstream 856894 19952453 ~ 20015422 (+)
igsf9b igsf9b,LOC107748591,LOC107662765,LOC107713446 coding upstream 932853 19826280 ~ 19939463 (+)
thyn1 thyn1,LOC107582572 coding upstream 1094601 19773738 ~ 19777715 (+)
LOC111193556 NA coding downstream 2790 20876909 ~ 20879031 (+)
LOC111193555 NA coding downstream 10429 20884548 ~ 20886467 (+)
pih1d2 NA coding downstream 28157 20902276 ~ 20908807 (+)
LOC103030893 arcn1,LOC108436511,LOC108278096 coding downstream 77224 20951343 ~ 20960236 (+)
LOC103033418 ubash3bb,LOC108436514,LOC108278382,LOC107709118,LOC107586242,LOC107601707,LOC107677523 coding downstream 119987 20994106 ~ 21053855 (+)
G12038 NA non-coding upstream 104917 20727543 ~ 20767399 (+)
G12039 NA non-coding upstream 117036 20728643 ~ 20755280 (+)
G12034 NA non-coding upstream 161638 20671034 ~ 20710678 (+)
G12027 NA non-coding upstream 252339 20562773 ~ 20619977 (+)
G12023 NA non-coding upstream 342879 20529047 ~ 20529437 (+)
G12165 NA non-coding downstream 117751 20991870 ~ 20992084 (+)
LOC103030577 NA non-coding downstream 182634 21056753 ~ 21162746 (+)
G12187 NA non-coding downstream 239736 21113855 ~ 21116020 (+)
G12242 NA non-coding downstream 296986 21171105 ~ 21171318 (+)
G12297 NA non-coding downstream 389808 21263927 ~ 21309318 (+)
LOC103043893 picalmb,LOC108435293,LOC107726102,LOC107662770,LOC107597534,LOC107729110,LOC107699893,LOC108278317,LOC105903807 other upstream 1427485 19412807 ~ 19444831 (+)
LOC111194200 NA other upstream 3728968 17139425 ~ 17143348 (+)
ccdc47 ccdc47,LOC107674171,LOC107658463,LOC107729550,LOC107721963 other upstream 4571649 16224721 ~ 16300667 (+)
ddx42 ddx42 other upstream 4837032 16011694 ~ 16035284 (+)
G10879 NA other upstream 4911938 15952846 ~ 15960378 (+)
LOC103033739 gkup,LOC108436512,LOC108278261,LOC106612544,LOC105024033,LOC107709108,LOC107717281,LOC107657260,LOC107586304 other downstream 88930 20963049 ~ 20990064 (+)
trnan-guu NA other downstream 102085 20976204 ~ 20976277 (+)
G12362 bco2b,LOC108436497,LOC107586303,LOC107657247 other downstream 585731 21459850 ~ 21463649 (+)
spa17 spa17,LOC107709112,LOC107586300,LOC107657238,LOC107717271 other downstream 1426877 22300996 ~ 22384972 (+)
oaf oaf,oafa,LOC107696006,LOC107709135,LOC107586231,LOC107657251,LOC107717291 other downstream 1599533 22473652 ~ 22517780 (+)

Expression


Co-expression Network