thyn1 (thyn1,LOC107582572)


Basic Information

Item Value
gene id thyn1
gene name thyn1,LOC107582572
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 19773738 ~ 19777715 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022674772.1
acttatttaaCGCGACATAAATGTGAATAATTATGCTTTAAAAGCTAATTGAATGacttttatttaagtattgtTAATTCTAtaagatttataataatacttGCACGTAGCCTGTTTATCTGTGTGCTTATTTAACCTGCAGCtagtttttttcccctaaaTATGCGCATTAGCTACATATAGtgagctgctctgtttgtaaaTGTTTAGCATGTCTGTAGGCCTGAGATAAACTGATGAGATAACTTGAAACACAGTAACGTTATCTAAGTGTGATTGAGTTTAACTGAGTTATATTTGTGTGGGAAATGCCACCCAAGAGGATAACACGAGCTACAGTGAAGCACAGTGAAGCTCCAGAAGCCTCTCCTGAAGAAGATGCTGTTCAGAAAGCACCtggtaaaagaaagagagcagcAGGAAAATCTGAGGACCAGAAAAGTCCAGAAGACAGTTCCTCCAGGTCCACATGCACATACAGCCACTGGCTGATGAAGTCTGAGCCTGAGAGTCGGATAGAGAATGGGGTGGATGTGAAGtttggaATTGAGGACCTTAAAGCTCTACCCAACCAAACTAGCTGCTGGGATGGAGTAAGAAATTATCAGGCCAGAAATTTCATGAGGGATATGAAAGAGGGCCATCAGGCATTCTTCTATCACAGCAACTGTAAAGAACCAGGCATAGCTGGTTTAATGAAGATTGTGAAGGAGGCCTATGTTGACCACACACAGTTCGACAAGAAAGATGTACATTATGATCCCTCCAGCAAATCTGAGAATCCAAAGTGGAGTATGgtggatgtaaagtttgagagaaTGAGCAAACGCTTCATCCCGTTAACGGAGCTGAAGAAGTATCACTTGCAGCACAAGAGTAAAGGTGGTCCACTCCAGAACATGGCTCTGTTCACCAGGGCTAGGCTTTCAGTCCAACCCTTAACTAAAGAGGAGTTCAACTTTGTCTTGAGTTTGGAAGATGCTGATCCAATATAACAGGCATGGCCTGGATGTCTGTGTGGTAAACCTGTGTTCTGTTAAAATGGTCTAATATACTGGaggtgtttttaaatgtgttattagcTTCTTAGCTCCACACTGTGGCCTATGTTCATTTATaattatctaaatatctaataaaatattttgtaaatcaG

Function

symbol description
thyn1 Predicted to be active in nucleus. Orthologous to human THYN1 (thymocyte nuclear protein 1).

NR:

description
thymocyte nuclear protein 1

GO:

id name namespace
GO:0005634 nucleus cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022674772.1 True 1156 mRNA 0.40 7 19773738 19777715

Neighbor

gene id symbol gene type direction distance location
LOC103025032 LOC108435274 coding upstream 11503 19756536 ~ 19762235 (+)
LOC103047658 esamb,LOC108435282 coding upstream 19785 19680874 ~ 19753953 (+)
LOC103047344 LOC107662768,LOC107597532,LOC107748584,LOC102234316,LOC107713435,LOC105903789 coding upstream 238636 19517613 ~ 19535102 (+)
LOC103046737 NA coding upstream 284484 19449562 ~ 19489254 (+)
LOC103040710 LOC108435288 coding upstream 582149 19123270 ~ 19191589 (+)
igsf9b igsf9b,LOC107748591,LOC107662765,LOC107713446 coding downstream 48565 19826280 ~ 19939463 (+)
LOC103025662 arhgap32,LOC108435303 coding downstream 174738 19952453 ~ 20015422 (+)
LOC103035031 LOC108435305 coding downstream 745163 20522878 ~ 20731709 (+)
LOC103032372 zbtb16b,LOC108435307,LOC108278332,LOC107699906,LOC107597519,LOC107701406,LOC107713452,LOC107582577,LOC107748597 coding downstream 968314 20746029 ~ 20844121 (+)
tmprss5 tmprss5,LOC107713421,LOC107717179 coding downstream 1074467 20852182 ~ 20900847 (+)
G11703 NA non-coding upstream 104494 19666960 ~ 19669244 (+)
G11678 NA non-coding upstream 237358 19535675 ~ 19536380 (+)
G11679 NA non-coding upstream 238211 19391303 ~ 19535527 (+)
G11673 NA non-coding upstream 413634 19359898 ~ 19360104 (+)
G11668 NA non-coding upstream 467171 19274881 ~ 19306567 (+)
LOC111193550 NA non-coding downstream 269112 20046827 ~ 20063468 (+)
G11856 NA non-coding downstream 280821 20058536 ~ 20147053 (+)
G11891 NA non-coding downstream 668679 20446394 ~ 20488144 (+)
G12023 NA non-coding downstream 751332 20529047 ~ 20529437 (+)
G12027 NA non-coding downstream 785058 20562773 ~ 20619977 (+)
LOC103043893 picalmb,LOC108435293,LOC107726102,LOC107662770,LOC107597534,LOC107729110,LOC107699893,LOC108278317,LOC105903807 other upstream 328907 19412807 ~ 19444831 (+)
LOC111194200 NA other upstream 2630390 17139425 ~ 17143348 (+)
ccdc47 ccdc47,LOC107674171,LOC107658463,LOC107729550,LOC107721963 other upstream 3473071 16224721 ~ 16300667 (+)
ddx42 ddx42 other upstream 3738454 16011694 ~ 16035284 (+)
G10879 NA other upstream 3813360 15952846 ~ 15960378 (+)
LOC103033739 gkup,LOC108436512,LOC108278261,LOC106612544,LOC105024033,LOC107709108,LOC107717281,LOC107657260,LOC107586304 other downstream 1185334 20963049 ~ 20990064 (+)
trnan-guu NA other downstream 1198489 20976204 ~ 20976277 (+)
G12362 bco2b,LOC108436497,LOC107586303,LOC107657247 other downstream 1682135 21459850 ~ 21463649 (+)
spa17 spa17,LOC107709112,LOC107586300,LOC107657238,LOC107717271 other downstream 2523281 22300996 ~ 22384972 (+)
oaf oaf,oafa,LOC107696006,LOC107709135,LOC107586231,LOC107657251,LOC107717291 other downstream 2695937 22473652 ~ 22517780 (+)

Expression


Co-expression Network