G11668


Basic Information

Item Value
gene id G11668
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 19274881 ~ 19306567 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU15724
ttttagttagtcggcagagtagtattagaagctgctgacaatccagagccgggaccaggccgcagacagagaggcttaaccgaccgtctgcgagctgcaaagagacgttacctagataccaatgtattcagactgtgtctgtcccccgagtcaaacaaaaacatcaaaaaactaaaacagtaaatctaaataacttaacttatattaaacaatcatatccagactgtagtactaacatttcaagcctaaagattggtttacttaatattagatctctaaattcaaaagcagttctggtgaatgaaatgataactgatcagaaattcgatgttctgtgtctgacagaaacctggattaggccaaatgaatatgtagcattaaatgaagccacccctgcaggATTCAATAAt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU15724 True 410 lncRNA 0.29 2 19274881 19306567

Neighbor

gene id symbol gene type direction distance location
LOC103040710 LOC108435288 coding upstream 83292 19123270 ~ 19191589 (+)
LOC103023445 med13,LOC108435287,LOC107729113,LOC105022380 coding upstream 157702 19073615 ~ 19117179 (+)
LOC107197927 NA coding upstream 206240 19055132 ~ 19068641 (+)
LOC103038931 NA coding upstream 461292 18793023 ~ 18813589 (+)
colca2 NA coding upstream 562618 18706505 ~ 18712263 (+)
LOC103046737 NA coding downstream 142995 19449562 ~ 19489254 (+)
LOC103047344 LOC107662768,LOC107597532,LOC107748584,LOC102234316,LOC107713435,LOC105903789 coding downstream 211046 19517613 ~ 19535102 (+)
LOC103047658 esamb,LOC108435282 coding downstream 374307 19680874 ~ 19753953 (+)
LOC103025032 LOC108435274 coding downstream 449969 19756536 ~ 19762235 (+)
thyn1 thyn1,LOC107582572 coding downstream 467171 19773738 ~ 19777715 (+)
G11671 NA non-coding upstream 140 19274120 ~ 19274741 (+)
G11658 LOC108435291,LOC107662773,LOC107586271,LOC107726100,LOC107597536 non-coding upstream 28366 19236913 ~ 19246515 (+)
G11638 NA non-coding upstream 77462 19113980 ~ 19197419 (+)
LOC111194223 NA non-coding upstream 401636 18838638 ~ 18873245 (+)
G11562 LOC103039462,LOC108435284,LOC108278369 non-coding upstream 437847 18835314 ~ 18837034 (+)
G11673 NA non-coding downstream 53331 19359898 ~ 19360104 (+)
G11679 NA non-coding downstream 84736 19391303 ~ 19535527 (+)
G11678 NA non-coding downstream 229108 19535675 ~ 19536380 (+)
G11703 NA non-coding downstream 360393 19666960 ~ 19669244 (+)
LOC111193550 NA non-coding downstream 740260 20046827 ~ 20063468 (+)
LOC111194200 NA other upstream 2131533 17139425 ~ 17143348 (+)
ccdc47 ccdc47,LOC107674171,LOC107658463,LOC107729550,LOC107721963 other upstream 2974214 16224721 ~ 16300667 (+)
ddx42 ddx42 other upstream 3239597 16011694 ~ 16035284 (+)
G10879 NA other upstream 3314503 15952846 ~ 15960378 (+)
G10838 NA other upstream 3505638 15758762 ~ 15769243 (+)
LOC103043893 picalmb,LOC108435293,LOC107726102,LOC107662770,LOC107597534,LOC107729110,LOC107699893,LOC108278317,LOC105903807 other downstream 106240 19412807 ~ 19444831 (+)
LOC103033739 gkup,LOC108436512,LOC108278261,LOC106612544,LOC105024033,LOC107709108,LOC107717281,LOC107657260,LOC107586304 other downstream 1656482 20963049 ~ 20990064 (+)
trnan-guu NA other downstream 1669637 20976204 ~ 20976277 (+)
G12362 bco2b,LOC108436497,LOC107586303,LOC107657247 other downstream 2153283 21459850 ~ 21463649 (+)
spa17 spa17,LOC107709112,LOC107586300,LOC107657238,LOC107717271 other downstream 2994429 22300996 ~ 22384972 (+)

Expression


Co-expression Network