LOC103047658 (esamb,LOC108435282)


Basic Information

Item Value
gene id LOC103047658
gene name esamb,LOC108435282
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 19680874 ~ 19753953 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007260550.3
gagagagactcagtgAAAGATGGAGCGGAGTGTCGCGCGCTGAGAGAAGAAGGCTCGTGGTGAATGAAGTGAAGTGCTGGAGGAAGATGTATGAGAGGAGTAGCTGAAGCGGCTGCTGTGTTTCTGAGCTCCGGGCTGAGTAACGGAGACTGTCCGCGTTTCAAACCGCGTTTAAGACACGAGACCCCCGCGAACCCTCCGCGAGGAGCAGCGCTGAGACCCTCCACCTCCTGCTCTGGATGAATTGTCCCAGCCGCTGTCTGTGGATGAGGGGACATGGAGAGGGTGAAGCCCTGGAGACTCGGAGcgctgctgtctctctctctgctgtgggCTCTGCCAGGTGATTTGCAGAAAGTTGAGATGCCAAGAAAAGACATGGAAGTAATCAAGGGCCAAATGGTAGTTCTGGAGGCTTGGTACACGCCCACATCCCCCATTGAGAAGAATACAGTCATCTGGAACTTCATGGCCAATGACTCCAAACAGATCATTTCCTACACCTCAGGCCAGATCGGGATGGGGAGTCCAGAGTTTAGGAAGCGTGTCGGCTTCGCCATGTCCATGCCCTCCACCAATCTCTCCATCTACATCAACAACACACAGGAGTCAGACTCGGGCCGCTACCTCTGCAACGTCATCATCCCCGGAGCACCAGGCCTGTCTGGAGAGCTGCGGCTCAATGTTAAAGtTCCCCCCTCCACCCCAGTGTGCTCCATAACTGGGGACCCTGTGCTGAGGGGCAACGTGACGCTCAGCTGCCAATCAAATCACGGCAAGCCCACCCCTCAGTACAAATGGACCAAAGCTGCTCCTCTTTCAGAGGTTTTCTTCTCTCCAATGCAGAAGTGGAGATCATGTCCTCAGCCCGTGCTTGTGCTGGGTTATCTGGATGAGAGGCAGGGCACCCTGAGGTTGAGCAACCTGACCAAGAACATGTCAGGCAAGTACGTCTGCAGGGCCAGCAACACAGCCGGGAGTGACAGCTGCCACATCAACCTGGAGGTCTCCACCCCCAACAATGCCTGGTTGATAGCTGGAGCCACTGTGGGCTCTGTGGTGGGACTGGTGGCCCTCATCCTGTTCCTGGTCTTTGTCCTGAGGAGGAGTCGCGACACAGAAGAGGAAATGGCTAACGATATCAAGGAGGATGCTCAGGCTCCCAAAAGGGTCTCCTGGGCCAAGAGCACCACTGGATCAGACATCATTTCCAAGAACGGCACTCTGTCTTCTATAGCCACCAGCCCTCCTCCCCGAGACCCTCACCACACCTCTAACAACCACTACCCATACCCACCCGGAGCCTGCGACACCGCCTCCGTCCTCACAGCGTCCGGCAGCACCACCGCCTTCCGCCTCCGCCCGGGAGAACCCAACCCTCTCCACGGCCTGCCTGGATACAACGGCAACagaacacaccaccaccaccaccacccggctcactcacacacacgagCCACCAGCTCAGACAGCAGCTCCACACACAGGACTGAAGgagctcagccacaggtcccgCGTCCTGTCCCCTCGCCCATCGGCTCCACCACACTCTCCCGCTTGGGAACCGTCCCTGTCCTCGTACCCAGCCAGAACCAGGCCGGCTCGCTCGTGTAGctctgcccacacacacacacacacacactcctccaacAGTGTGACTGAActgcagagaaaacacacacacagcttctgcTGATGCTTCTTGATGAATCTTGATGGACGCAAGTGAGTTTGGACTCTTCTCACATCAGCCAGATGGTGGAAACATCACTACGGTTGATTTATAGATTAAAgagttacttttttatattcaaGATTTAAGGAAAATATAGGCGTATGTAGCAGTTTGTTTTATAAAGTATtgtttgaggttttttttattatttatgagtTTATGAGTGTAATCAGCAGGCCGTGATGcctaaaacacacagacagatttAGAGTTTTGCATTTTCAAACTTTGACCAAACTTTCACCAAAATATTATAGTACTTTTCTTGTGGTTAGAGAATTGGATAcgacaaatctgtttttttaattcagctgATTCAATTTCTGTTTTATCAACAGTCAGTTTCTGTTTTACCAGCGTTTTCTTTCCAGAAAGTGAAATTGAGAATGTCCTCTCTGCTGTTGTTACTGTATTTGAGGGCTTACTGAAGTTAAAAGTTCACCTGATCCTGTTTCAGGTCTTTGTTGGAGTGTTGGAATATTTCATTGGGGTAAACAATGCTGTATTAGGTGTGTTCTGTAACTCTTAATGTTACCTTGTGCCTCCTTTTGCTCAGGAGTTTTTACGTTGGGCAACTGTTCTCTCAGATAACCCTGAACACATTTTGTAGCCTGAACAACAGggtttttaatactaaaaaatacaaatacttcaATGCTTTTCAcctttaaaatgtcaaaaagtTGGGTAAATTAACTCAATGTGGAGAATTTTGTTTTTAGGATTGCTTTATACCAATCTAACACCAATCTTATATTTTAGTCCGGTTGATTCAGACTCGAATTGGGACCAGAACAACCGCACCAAAACCTTTTAGTAGAGGTGGAATTAGTctttggattttttattttttttttttctcgcaaaaacatgattttatcTTGAGCTAAACGCCTCCCCTAAGCATCTATAGCATTGCTTTCTGTTAAACTGCACAGAACTGTCTCACATTAGGGCAATTCACCCTACAAGCCCAATGTTCTGGTCATTTTCTGGACCAAAAATATGTAGAAAGTTCTTCACAATCTTTTTGAAAAATACTGAGATATGTCAGTCATGTGGaaatatttctatattatttactacatttatttttattcatgtttactCTCGGCTCTAAGAAGATCTGGCCTCGTGGCTTCGCGGTCAGTGCATCAGCTCTCTGTTCAGGTCTGTGCTGGATGCTGAATATTTTAGTGAGGTTCAGCAAATTAAGTAGTGATACAACCTTTCATTTGCAGGAGGAAGTTCTTTTAAACTCCAGCCTTTATTCTCAGTTTGTCCACATGGTGGGAGTAAAGAGATACGAGAGAAATGTTCTACTGCTTTAGTGAAAAGGGAAAGAGTGCCCAAATCTGttttgttcattaaaaaaatggacCATTATTCTGCTCGTTCAATAAACGCTAACAATTCTTGTTTAA
>XM_007260551.3
gagagagactcagtgAAAGATGGAGCGGAGTGTCGCGCGCTGAGAGAAGAAGGCTCGTGGTGAATGAAGTGAAGTGCTGGAGGAAGATGTATGAGAGGAGTAGCTGAAGCGGCTGCTGTGTTTCTGAGCTCCGGGCTGAGTAACGGAGACTGTCCGCGTTTCAAACCGCGTTTAAGACACGAGACCCCCGCGAACCCTCCGCGAGGAGCAGCGCTGAGACCCTCCACCTCCTGCTCTGGATGAATTGTCCCAGCCGCTGTCTGTGGATGAGGGGACATGGAGAGGGTGAAGCCCTGGAGACTCGGAGcgctgctgtctctctctctgctgtgggCTCTGCCAGGTGATTTGCAGAAAGTTGAGATGCCAAGAAAAGACATGGAAGTAATCAAGGGCCAAATGGTAGTTCTGGAGGCTTGGTACACGCCCACATCCCCCATTGAGAAGAATACAGTCATCTGGAACTTCATGGCCAATGACTCCAAACAGATCATTTCCTACACCTCAGGCCAGATCGGGATGGGGAGTCCAGAGTTTAGGAAGCGTGTCGGCTTCGCCATGTCCATGCCCTCCACCAATCTCTCCATCTACATCAACAACACACAGGAGTCAGACTCGGGCCGCTACCTCTGCAACGTCATCATCCCCGGAGCACCAGGCCTGTCTGGAGAGCTGCGGCTCAATGTTAAAGtTCCCCCCTCCACCCCAGTGTGCTCCATAACTGGGGACCCTGTGCTGAGGGGCAACGTGACGCTCAGCTGCCAATCAAATCACGGCAAGCCCACCCCTCAGTACAAATGGACCAAAGCTGCTCCTCTTTCAGAGGTTTTCTTCTCTCCAATGCAGAATGAGAGGCAGGGCACCCTGAGGTTGAGCAACCTGACCAAGAACATGTCAGGCAAGTACGTCTGCAGGGCCAGCAACACAGCCGGGAGTGACAGCTGCCACATCAACCTGGAGGTCTCCACCCCCAACAATGCCTGGTTGATAGCTGGAGCCACTGTGGGCTCTGTGGTGGGACTGGTGGCCCTCATCCTGTTCCTGGTCTTTGTCCTGAGGAGGAGTCGCGACACAGAAGAGGAAATGGCTAACGATATCAAGGAGGATGCTCAGGCTCCCAAAAGGGTCTCCTGGGCCAAGAGCACCACTGGATCAGACATCATTTCCAAGAACGGCACTCTGTCTTCTATAGCCACCAGCCCTCCTCCCCGAGACCCTCACCACACCTCTAACAACCACTACCCATACCCACCCGGAGCCTGCGACACCGCCTCCGTCCTCACAGCGTCCGGCAGCACCACCGCCTTCCGCCTCCGCCCGGGAGAACCCAACCCTCTCCACGGCCTGCCTGGATACAACGGCAACagaacacaccaccaccaccaccacccggctcactcacacacacgagCCACCAGCTCAGACAGCAGCTCCACACACAGGACTGAAGgagctcagccacaggtcccgCGTCCTGTCCCCTCGCCCATCGGCTCCACCACACTCTCCCGCTTGGGAACCGTCCCTGTCCTCGTACCCAGCCAGAACCAGGCCGGCTCGCTCGTGTAGctctgcccacacacacacacacacacactcctccaacAGTGTGACTGAActgcagagaaaacacacacacagcttctgcTGATGCTTCTTGATGAATCTTGATGGACGCAAGTGAGTTTGGACTCTTCTCACATCAGCCAGATGGTGGAAACATCACTACGGTTGATTTATAGATTAAAgagttacttttttatattcaaGATTTAAGGAAAATATAGGCGTATGTAGCAGTTTGTTTTATAAAGTATtgtttgaggttttttttattatttatgagtTTATGAGTGTAATCAGCAGGCCGTGATGcctaaaacacacagacagatttAGAGTTTTGCATTTTCAAACTTTGACCAAACTTTCACCAAAATATTATAGTACTTTTCTTGTGGTTAGAGAATTGGATAcgacaaatctgtttttttaattcagctgATTCAATTTCTGTTTTATCAACAGTCAGTTTCTGTTTTACCAGCGTTTTCTTTCCAGAAAGTGAAATTGAGAATGTCCTCTCTGCTGTTGTTACTGTATTTGAGGGCTTACTGAAGTTAAAAGTTCACCTGATCCTGTTTCAGGTCTTTGTTGGAGTGTTGGAATATTTCATTGGGGTAAACAATGCTGTATTAGGTGTGTTCTGTAACTCTTAATGTTACCTTGTGCCTCCTTTTGCTCAGGAGTTTTTACGTTGGGCAACTGTTCTCTCAGATAACCCTGAACACATTTTGTAGCCTGAACAACAGggtttttaatactaaaaaatacaaatacttcaATGCTTTTCAcctttaaaatgtcaaaaagtTGGGTAAATTAACTCAATGTGGAGAATTTTGTTTTTAGGATTGCTTTATACCAATCTAACACCAATCTTATATTTTAGTCCGGTTGATTCAGACTCGAATTGGGACCAGAACAACCGCACCAAAACCTTTTAGTAGAGGTGGAATTAGTctttggattttttattttttttttttctcgcaaaaacatgattttatcTTGAGCTAAACGCCTCCCCTAAGCATCTATAGCATTGCTTTCTGTTAAACTGCACAGAACTGTCTCACATTAGGGCAATTCACCCTACAAGCCCAATGTTCTGGTCATTTTCTGGACCAAAAATATGTAGAAAGTTCTTCACAATCTTTTTGAAAAATACTGAGATATGTCAGTCATGTGGaaatatttctatattatttactacatttatttttattcatgtttactCTCGGCTCTAAGAAGATCTGGCCTCGTGGCTTCGCGGTCAGTGCATCAGCTCTCTGTTCAGGTCTGTGCTGGATGCTGAATATTTTAGTGAGGTTCAGCAAATTAAGTAGTGATACAACCTTTCATTTGCAGGAGGAAGTTCTTTTAAACTCCAGCCTTTATTCTCAGTTTGTCCACATGGTGGGAGTAAAGAGATACGAGAGAAATGTTCTACTGCTTTAGTGAAAAGGGAAAGAGTGCCCAAATCTGttttgttcattaaaaaaatggacCATTATTCTGCTCGTTCAATAAACGCTAACAATTCTTGTTTAA

Function

symbol description
esamb Predicted to act upstream of or within cell-cell adhesion. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in dorsal aorta and posterior cardinal vein. Orthologous to human ESAM (endothelial cell adhesion molecule).

NR:

description
PREDICTED: endothelial cell-selective adhesion molecule-like isoform X3

GO: NA

KEGG:

id description
K06787 ESAM; endothelial cell adhesion molecule

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007260550.3 True 3159 mRNA 0.47 8 19680874 19753953
XM_007260551.3 False 3114 mRNA 0.47 7 19680874 19753953

Neighbor

gene id symbol gene type direction distance location
LOC103047344 LOC107662768,LOC107597532,LOC107748584,LOC102234316,LOC107713435,LOC105903789 coding upstream 145772 19517613 ~ 19535102 (+)
LOC103046737 NA coding upstream 191620 19449562 ~ 19489254 (+)
LOC103040710 LOC108435288 coding upstream 489285 19123270 ~ 19191589 (+)
LOC103023445 med13,LOC108435287,LOC107729113,LOC105022380 coding upstream 563695 19073615 ~ 19117179 (+)
LOC107197927 NA coding upstream 612233 19055132 ~ 19068641 (+)
LOC103025032 LOC108435274 coding downstream 2583 19756536 ~ 19762235 (+)
thyn1 thyn1,LOC107582572 coding downstream 19785 19773738 ~ 19777715 (+)
igsf9b igsf9b,LOC107748591,LOC107662765,LOC107713446 coding downstream 72327 19826280 ~ 19939463 (+)
LOC103025662 arhgap32,LOC108435303 coding downstream 198500 19952453 ~ 20015422 (+)
LOC103035031 LOC108435305 coding downstream 768925 20522878 ~ 20731709 (+)
G11703 NA non-coding upstream 11630 19666960 ~ 19669244 (+)
G11678 NA non-coding upstream 144494 19535675 ~ 19536380 (+)
G11679 NA non-coding upstream 145347 19391303 ~ 19535527 (+)
G11673 NA non-coding upstream 320770 19359898 ~ 19360104 (+)
G11668 NA non-coding upstream 374307 19274881 ~ 19306567 (+)
LOC111193550 NA non-coding downstream 292874 20046827 ~ 20063468 (+)
G11856 NA non-coding downstream 304583 20058536 ~ 20147053 (+)
G11891 NA non-coding downstream 692441 20446394 ~ 20488144 (+)
G12023 NA non-coding downstream 775094 20529047 ~ 20529437 (+)
G12027 NA non-coding downstream 808820 20562773 ~ 20619977 (+)
LOC103043893 picalmb,LOC108435293,LOC107726102,LOC107662770,LOC107597534,LOC107729110,LOC107699893,LOC108278317,LOC105903807 other upstream 236043 19412807 ~ 19444831 (+)
LOC111194200 NA other upstream 2537526 17139425 ~ 17143348 (+)
ccdc47 ccdc47,LOC107674171,LOC107658463,LOC107729550,LOC107721963 other upstream 3380207 16224721 ~ 16300667 (+)
ddx42 ddx42 other upstream 3645590 16011694 ~ 16035284 (+)
G10879 NA other upstream 3720496 15952846 ~ 15960378 (+)
LOC103033739 gkup,LOC108436512,LOC108278261,LOC106612544,LOC105024033,LOC107709108,LOC107717281,LOC107657260,LOC107586304 other downstream 1209096 20963049 ~ 20990064 (+)
trnan-guu NA other downstream 1222251 20976204 ~ 20976277 (+)
G12362 bco2b,LOC108436497,LOC107586303,LOC107657247 other downstream 1705897 21459850 ~ 21463649 (+)
spa17 spa17,LOC107709112,LOC107586300,LOC107657238,LOC107717271 other downstream 2547043 22300996 ~ 22384972 (+)
oaf oaf,oafa,LOC107696006,LOC107709135,LOC107586231,LOC107657251,LOC107717291 other downstream 2719699 22473652 ~ 22517780 (+)

Expression


Co-expression Network