G11678


Basic Information

Item Value
gene id G11678
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 19535675 ~ 19536380 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU15765
tctggatctctgaacgctgtgggagaacggaggtgtgctattcatcaaaggtaagaactttttatcatgttttacaccagagttctcctttaaacacTTGCAATCTATCAGAACTTTACTTGTGACCATATACTTGTGAGTTTGAGTCTAAGGAATGTCTCTTACTgagaatttactttttttatgttttctaatGTTAAAGAAGCACGTTTATCCACTGGTGTTCACTGACTAGTGTTGCGTTTGTTTGTCTCACGTTCTCACGTAAAAAAATTGTGTGGCTCTCTTGAGTATATGCACTgctatttacaataaaaacttgcagatttctgtgttttctgtatttaaaactgattttttttttgttgtatccTGAGAATTGAGTCTATATTTTTGAGccttttcaacaaaaaaaacatataccaacttttttttttttacttttttacataaaagaacATGCTTATTCTTCTTAATTCATGAaggcacttaaaataaaataacttacaaTAGGAAAGAAGAAAAGGGAGCAATGGTGATATATACGgttatttatcagttttaaaggCTCACTTGTTGCACTgtattaaaaactgcatttcagTTCTACAGTAACACACTTTAAGCCTATGTGTTTTGTATGGTATCTGGATACATGGATGgctttattgttcattaaaaaaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU15765 True 685 lncRNA 0.32 2 19535675 19536380

Neighbor

gene id symbol gene type direction distance location
LOC103047344 LOC107662768,LOC107597532,LOC107748584,LOC102234316,LOC107713435,LOC105903789 coding upstream 573 19517613 ~ 19535102 (+)
LOC103046737 NA coding upstream 46421 19449562 ~ 19489254 (+)
LOC103040710 LOC108435288 coding upstream 344086 19123270 ~ 19191589 (+)
LOC103023445 med13,LOC108435287,LOC107729113,LOC105022380 coding upstream 418496 19073615 ~ 19117179 (+)
LOC107197927 NA coding upstream 467034 19055132 ~ 19068641 (+)
LOC103047658 esamb,LOC108435282 coding downstream 144494 19680874 ~ 19753953 (+)
LOC103025032 LOC108435274 coding downstream 220156 19756536 ~ 19762235 (+)
thyn1 thyn1,LOC107582572 coding downstream 237358 19773738 ~ 19777715 (+)
igsf9b igsf9b,LOC107748591,LOC107662765,LOC107713446 coding downstream 289900 19826280 ~ 19939463 (+)
LOC103025662 arhgap32,LOC108435303 coding downstream 416073 19952453 ~ 20015422 (+)
G11679 NA non-coding upstream 148 19391303 ~ 19535527 (+)
G11673 NA non-coding upstream 175571 19359898 ~ 19360104 (+)
G11668 NA non-coding upstream 229108 19274881 ~ 19306567 (+)
G11671 NA non-coding upstream 260934 19274120 ~ 19274741 (+)
G11658 LOC108435291,LOC107662773,LOC107586271,LOC107726100,LOC107597536 non-coding upstream 289160 19236913 ~ 19246515 (+)
G11703 NA non-coding downstream 130580 19666960 ~ 19669244 (+)
LOC111193550 NA non-coding downstream 510447 20046827 ~ 20063468 (+)
G11856 NA non-coding downstream 522156 20058536 ~ 20147053 (+)
G11891 NA non-coding downstream 910014 20446394 ~ 20488144 (+)
G12023 NA non-coding downstream 992667 20529047 ~ 20529437 (+)
LOC103043893 picalmb,LOC108435293,LOC107726102,LOC107662770,LOC107597534,LOC107729110,LOC107699893,LOC108278317,LOC105903807 other upstream 90844 19412807 ~ 19444831 (+)
LOC111194200 NA other upstream 2392327 17139425 ~ 17143348 (+)
ccdc47 ccdc47,LOC107674171,LOC107658463,LOC107729550,LOC107721963 other upstream 3235008 16224721 ~ 16300667 (+)
ddx42 ddx42 other upstream 3500391 16011694 ~ 16035284 (+)
G10879 NA other upstream 3575297 15952846 ~ 15960378 (+)
LOC103033739 gkup,LOC108436512,LOC108278261,LOC106612544,LOC105024033,LOC107709108,LOC107717281,LOC107657260,LOC107586304 other downstream 1426669 20963049 ~ 20990064 (+)
trnan-guu NA other downstream 1439824 20976204 ~ 20976277 (+)
G12362 bco2b,LOC108436497,LOC107586303,LOC107657247 other downstream 1923470 21459850 ~ 21463649 (+)
spa17 spa17,LOC107709112,LOC107586300,LOC107657238,LOC107717271 other downstream 2764616 22300996 ~ 22384972 (+)
oaf oaf,oafa,LOC107696006,LOC107709135,LOC107586231,LOC107657251,LOC107717291 other downstream 2937272 22473652 ~ 22517780 (+)

Expression


Co-expression Network