G11679


Basic Information

Item Value
gene id G11679
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 19391303 ~ 19535527 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU15767
cacttttttcaccgttgtccagctcaaagtagctccacacctccttgctagaatccggagagctctgacatttaaaactacGCCAGAATTACACTGCTACGCCaagaggcaggctatgcggagtctatgtatatatatatctatgttattattatcagtacagtgatggcggcgcccgGAGCTGAAGCTCGCGTTATAggatataaacagtgttttttttttttttaaataagcttcttgtgcactttttaagttattaatgcctt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU15767 True 266 lncRNA 0.39 2 19391303 19535527

Neighbor

gene id symbol gene type direction distance location
LOC103040710 LOC108435288 coding upstream 199714 19123270 ~ 19191589 (+)
LOC103023445 med13,LOC108435287,LOC107729113,LOC105022380 coding upstream 274124 19073615 ~ 19117179 (+)
LOC107197927 NA coding upstream 322662 19055132 ~ 19068641 (+)
LOC103038931 NA coding upstream 577714 18793023 ~ 18813589 (+)
colca2 NA coding upstream 679040 18706505 ~ 18712263 (+)
LOC103047658 esamb,LOC108435282 coding downstream 145347 19680874 ~ 19753953 (+)
LOC103025032 LOC108435274 coding downstream 221009 19756536 ~ 19762235 (+)
thyn1 thyn1,LOC107582572 coding downstream 238211 19773738 ~ 19777715 (+)
igsf9b igsf9b,LOC107748591,LOC107662765,LOC107713446 coding downstream 290753 19826280 ~ 19939463 (+)
LOC103025662 arhgap32,LOC108435303 coding downstream 416926 19952453 ~ 20015422 (+)
G11673 NA non-coding upstream 31199 19359898 ~ 19360104 (+)
G11668 NA non-coding upstream 84736 19274881 ~ 19306567 (+)
G11671 NA non-coding upstream 116562 19274120 ~ 19274741 (+)
G11658 LOC108435291,LOC107662773,LOC107586271,LOC107726100,LOC107597536 non-coding upstream 144788 19236913 ~ 19246515 (+)
G11638 NA non-coding upstream 193884 19113980 ~ 19197419 (+)
G11678 NA non-coding downstream 148 19535675 ~ 19536380 (+)
G11703 NA non-coding downstream 131433 19666960 ~ 19669244 (+)
LOC111193550 NA non-coding downstream 511300 20046827 ~ 20063468 (+)
G11856 NA non-coding downstream 523009 20058536 ~ 20147053 (+)
G11891 NA non-coding downstream 910867 20446394 ~ 20488144 (+)
LOC111194200 NA other upstream 2247955 17139425 ~ 17143348 (+)
ccdc47 ccdc47,LOC107674171,LOC107658463,LOC107729550,LOC107721963 other upstream 3090636 16224721 ~ 16300667 (+)
ddx42 ddx42 other upstream 3356019 16011694 ~ 16035284 (+)
G10879 NA other upstream 3430925 15952846 ~ 15960378 (+)
G10838 NA other upstream 3622060 15758762 ~ 15769243 (+)
LOC103033739 gkup,LOC108436512,LOC108278261,LOC106612544,LOC105024033,LOC107709108,LOC107717281,LOC107657260,LOC107586304 other downstream 1427522 20963049 ~ 20990064 (+)
trnan-guu NA other downstream 1440677 20976204 ~ 20976277 (+)
G12362 bco2b,LOC108436497,LOC107586303,LOC107657247 other downstream 1924323 21459850 ~ 21463649 (+)
spa17 spa17,LOC107709112,LOC107586300,LOC107657238,LOC107717271 other downstream 2765469 22300996 ~ 22384972 (+)
oaf oaf,oafa,LOC107696006,LOC107709135,LOC107586231,LOC107657251,LOC107717291 other downstream 2938125 22473652 ~ 22517780 (+)

Expression


Co-expression Network