LOC103038931


Basic Information

Item Value
gene id LOC103038931
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 18793023 ~ 18813589 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007260520.3
ACAGAACAGGTAGAAGCTGAACCCCTGCAGGGCAGTTAGGCTAATTTCCAGCTTtctgtctcttctgtctctGTCCCGCCTCCCTTACTGCAGACTGAAAGACGTCCTTACCTCACACAACTATGCATTTCCTCGCACGCACACTCTCGCTGAGGAGCACAGctttaccGCTCTAAAGGGAGACTAGATAATGAGGAGTCCTCTGGAGGAGGCAGACGACGAGAGGATGCCGCAGAGCCGTGAGTGGAGAGATTACCATCATGGTGTTCATCAGTGTGACACTTCACCACTTCCAGCAGCACCAGCCTCAAACACAAACCCACCAAACTCGCCCACCTCAGCACTTACAGGGGTCGGTCTGGAGCTGCATAACCACATTCCAGACATCAAGCAAGCTTCAACCTCTTCAACAGGTCCAAAATCCAGGAAAGGCAAAAATGATAATAGATACCTGGGTGTCAGAGTGAGAATGCCAGTAAAAGACATGCTGAGGAATTTTCGCATAGCCAAGGGCATGGATCCAAAAGAGCTGCAGGAGGACAGTAAAGGAACAAAAGGTAAAAAACGAGTCAACACAAGCGCTGATCGGAGAAACAGACTGAAAAAGTGGCAAACCAAGAGTTTGGAGGAACTTGCCATCATAGTGGAAGTGCTGGAAGAAGATCTAAAGACCAGTACATCTCCAAGACCAGCAAATATGCACCAGTCTTCTACCCAATCCCCAGAGCCAGGAGACAAAAACTGGTGTGAACACAAGACCCAACAGAGCTTTACGTTCGATTCACCTCCAAATCGAAGTTTCTGTGAAACAAATACGTTTCTCATGCGATCCGTCGAGCTCTACAACTCCTTCCCCAGTTCTGCTTATAACCAGACCATCACTCCCAACAGTCAGGAGGGTTATGACCATTATGAGTCAGTCTATTATAGACCCAAGAGCCAGGCTGGAATGATCTGCTCACCTGGTGAAGGTGAATACCAGGTGCCCTCTCCACAAGAAGCAAGTTGGTGTGGTTCCACAAGGGAGATGAGCGGTCCAGCGTATCCCTACTCAGTTCAGGAGGACTGGGGCAGTCTGGCATTCTTCTGGACCCAAATGAAAAGAGAGGAGCACCTACAGAGTTCGATAACTGACCAAGAGCTTCTGGCCCTGGATAAGTGTGGGAGAACGCTGCTACACAGAGCTGTAGAAGAGGGGAAGCGAGCTCTCGTGTATGTGATCGCCAGAAGGATGGCAGAACTGAAGAAGCTGGATGTTAAAGATACAGAGGGAAAGACTCCTCTCCACCTGGCTGCACACAGGAATCAGCATCTCGTAGTTGCAGATTTGATTTCTCTCGGTGCAAACATCAACGAGAAGGACCGATATGGAAAGACGTGCCTCCACATCAGTGCAGAATATGGATATGTCAGAGTTTTGGAGGTGCTGAAGAGCTGCATGAGGAATGGAATTTATATTGACTTGGAGGCCAGAGACATGAATGgaCTCAGTGCGTTGCAGCATGCCTCAGTGACTCTGAAGAGCACAGTGTGTGAGCTGGAGAGGAGCGTGACTGCAGATCAGACCCGGCTGCACTCTCTGCGGAAAGAGCAGATGATGGAGACGCTGGAGTGTCTTCTGCAGATGGAATGCAGCCTGCAGGTGAGTCACGACCACGTGTCCACGTGACTCATATGAAAGTGAACACACTCACACGCTTCctttgaatttgttttcttaaaTTAAGAATAGGGATGGGCAGAGGTGAATGACGAACAAAGTATTTCAAAGTATTTATTACGCAATGCTCTGTATCACACAAACACGGCTTTCCACTGTAATAGAACACGTATCAACCAAACCAAATGAAGCACAGGAGAACCTGCAATTTCCCTCAACATGTGGTGcaattttcctttaaaataatatataatcattttgccCTTTGTTCATGGCAGTTATGCCAGGCTTCATTTCAGTCACACTCCAGTGAATTATagttctaatatatattttgtttagttttaaagtGCTTATGTAGATGATATCTCGTATTTATAATCATTGTCTTATGTTAtataggctatgttcacattaccaggctgaagtg
>XM_007260521.3
CAGAACAGGTAGAAGCTGAACCCCTGCAGGGCAGTTAGGCTAATTTCCAGCTTtctgtctcttctgtctctGTCCCGCCTCCCTTACTGCAGACTGAAAGACGTCCTTACCTCACACAACTATGCATTTCCTCGCACGCACACTCTCGCTGAGGAGCACAGctttaccGCTCTAAAGGGAGACTAGATAATGAGGAGTCCTCTGGAGGAGGCAGACGACGAGAGGATGCCGCAGAGCCGTGAGTGGAGAGATTACCATCATGGTGTTCATCAGTGTGACACTTCACCACTTCCAGCAGCACCAGCCTCAAACACAAACCCACCAAACTCGCCCACCTCAGCACTTACAGGGGTCGGTCTGGAGCTGCATAACCACATTCCAGACATCAAGCAAGCTTCAACCTCTTCAACAGGTCCAAAATCCAGGAAAGGCAAAAATGATAATAGATACCTGGGTGTCAGAGTGAGAATGCCAGTAAAAGACATGCTGAGGAATTTTCGCATAGCCAAGGGCATGGATCCAAAAGAGCTGCAGGAGGACAGTAAAGGAACAAAAGGTAAAAAACGAGTCAACACAAGCGCTGATCGGAGAAACAGACTGAAAAAGTGGCAAACCAAGAGTTTGGAGGAACTTGCCATCATAGTGGAAGTGCTGGAAGAAGATCTAAAGACCAGTACATCTCCAAGACCAGCAAATATGCACCAGTCTTCTACCCAATCCCCAGAGCCAGGAGACAAAAACTGGTGTGAACACAAGACCCAACAGAGCTTTACGTTCGATTCACCTCCAAATCGAAGTTTCTGTGAAACAAATACGTTTCTCATGCGATCCGTCGAGCTCTACAACTCCTTCCCCAGTTCTGCTTATAACCAGACCATCACTCCCAACAGTCAGGAGGGTTATGACCATTATGAGTCAGTCTATTATAGACCCAAGAGCCAGGCTGGAATGATCTGCTCACCTGGTGAAGGTGAATACCAGGTGCCCTCTCCACAAGAAGCAAGTTGGTGTGGTTCCACAAGGGAGATGAGCGGTCCAGCGTATCCCTACTCAGTTCAGGAGGACTGGGGCAGTCTGGCATTCTTCTGGACCCAAATGAAAAGAGAGGAGCACCTACAGAGTTCGATAACTGACCAAGAGCTTCTGGCCCTGGATAAGTGTGGGAGAACGCTGCTACACAGAGCTGTAGAAGAGGGGAAGCGAGCTCTCGTGTATGTGATCGCCAGAAGGATGGCAGAACTGAAGAAGCTGGATGTTAAAGATACAGAGGGAAAGACTCCTCTCCACCTGGCTGCACACAGGAATCAGCATCTCGTAGTTGCAGATTTGATTTCTCTCGGTGCAAACATCAACGAGAAGGACCGATATGGAAAGACGTGCCTCCACATCAGTGCAGAATATGGATATGTCAGAGTTTTGGAGGTGCTGAAGAGCTGCATGAGGAATGGAATTTATATTGACTTGGAGGCCAGAGACATGAATGgaCTCAGTGCGTTGCAGCATGCCTCAGTGACTCTGAAGAGCACAGTGTGTGAGCTGGAGAGGAGCGTGACTGCAGATCAGACCCGGCTGCACTCTCTGCGGAAAGAGCAGATGATGGAGACGCTGGAGTGTCTTCTGCAGATGGAATGCAGCCTGCAGGTCATGTAGCCCAGCAGAGGACTGTCCAGACCCGCAGCTGCTTCTCACACAGCGAGTGCTTTCTGCTGAACAAGGCAGTGTTGTTACCTGACGGTAAATGTTTTTGGGTTAATACAGGTTTGTACCTGCCACAGACGCAGCATAATTGCATGTTCTCAATACGTTTAATAGAGGAAGGACATCTGTGGCATGGTAAAAGCTATGTATTATGCAACCAGAGCTTTTGTGAAGTGAAATCACAGGAGAGAAAGCCTCCTGTCTCACTCGCGACACAATAATGCAACGGTTGTGCATCAGCTGGTTTCTGTGAAACTTCCACTGTTTGTTACGTTAAAGTAGCAGAATATTGAACTGAAATGTGGTGCGATCTGCAGCTCTGCTTCCTGTCACTTTAACGGGTTAGTCTCTTTTATAACTATGCTCTAAGAGCAAAAGACTAACAGCTGTGAAGGATCATCAGACCTGTAGATTCGTGCCATGTTCATATAAGGTTACGTGAACTTTTTGACTCACTTTAGGATTTCCTGTTTTGTTGGTTTCGTGTTTTCTGAAGCTGTACGTTTGATTATTGTTTGAAATTATATTGAACAACAATTAAatctaattatattatataacattgGGACTGGGAATGTGGGGCTATTCTGTATAAATACCAGTATTCATTTACTACAGCATTTATATATCTGAATAATACTCTGTGAAAATGAATTGTGTGAATAATTCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007260520.3 False 2090 mRNA 0.47 10 18793023 18812210
XM_007260521.3 True 2368 mRNA 0.46 11 18793024 18813589

Neighbor

gene id symbol gene type direction distance location
colca2 NA coding upstream 80760 18706505 ~ 18712263 (+)
LOC107197920 adamts8,LOC108443347 coding upstream 93440 18674803 ~ 18699583 (+)
LOC103040662 LOC108443347 coding upstream 143449 18635912 ~ 18649574 (+)
LOC103036172 LOC108443349 coding upstream 283690 18461188 ~ 18509333 (+)
rps6kb1 rps6kb1b,rps6kb1,LOC108443350,LOC107701421,LOC107597508 coding upstream 333196 18447497 ~ 18459827 (+)
LOC107197927 NA coding downstream 241543 19055132 ~ 19068641 (+)
LOC103023445 med13,LOC108435287,LOC107729113,LOC105022380 coding downstream 260026 19073615 ~ 19117179 (+)
LOC103040710 LOC108435288 coding downstream 309681 19123270 ~ 19191589 (+)
LOC103046737 NA coding downstream 635973 19449562 ~ 19489254 (+)
LOC103047344 LOC107662768,LOC107597532,LOC107748584,LOC102234316,LOC107713435,LOC105903789 coding downstream 704024 19517613 ~ 19535102 (+)
G11549 NA non-coding upstream 27999 18744957 ~ 18765024 (+)
G11547 NA non-coding upstream 60713 18732075 ~ 18732310 (+)
G11545 NA non-coding upstream 64636 18728110 ~ 18728387 (+)
G11517 NA non-coding upstream 88645 18647879 ~ 18704378 (+)
G11507 NA non-coding upstream 240915 18551580 ~ 18552108 (+)
G11557 NA non-coding downstream 11122 18824711 ~ 18824933 (+)
G11558 NA non-coding downstream 11910 18825499 ~ 18825712 (+)
G11559 NA non-coding downstream 13861 18827450 ~ 18827789 (+)
G11562 LOC103039462,LOC108435284,LOC108278369 non-coding downstream 21725 18835314 ~ 18837034 (+)
LOC111194223 NA non-coding downstream 25049 18838638 ~ 18873245 (+)
LOC111194200 NA other upstream 1649675 17139425 ~ 17143348 (+)
ccdc47 ccdc47,LOC107674171,LOC107658463,LOC107729550,LOC107721963 other upstream 2492356 16224721 ~ 16300667 (+)
ddx42 ddx42 other upstream 2757739 16011694 ~ 16035284 (+)
G10879 NA other upstream 2832645 15952846 ~ 15960378 (+)
G10838 NA other upstream 3023780 15758762 ~ 15769243 (+)
LOC103043893 picalmb,LOC108435293,LOC107726102,LOC107662770,LOC107597534,LOC107729110,LOC107699893,LOC108278317,LOC105903807 other downstream 599218 19412807 ~ 19444831 (+)
LOC103033739 gkup,LOC108436512,LOC108278261,LOC106612544,LOC105024033,LOC107709108,LOC107717281,LOC107657260,LOC107586304 other downstream 2149460 20963049 ~ 20990064 (+)
trnan-guu NA other downstream 2162615 20976204 ~ 20976277 (+)
G12362 bco2b,LOC108436497,LOC107586303,LOC107657247 other downstream 2646261 21459850 ~ 21463649 (+)
spa17 spa17,LOC107709112,LOC107586300,LOC107657238,LOC107717271 other downstream 3487407 22300996 ~ 22384972 (+)

Expression


Co-expression Network