G11562 (LOC103039462,LOC108435284,LOC108278369)


Basic Information

Item Value
gene id G11562
gene name LOC103039462,LOC108435284,LOC108278369
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 18835314 ~ 18837034 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU15575
AGCAGCCGTCTTGTTCTGATCTCTCTTCTTCTGCTTGCGTTCTCCGTGGTTTCTCTCCGGGGGACCTACTTTGACATCTGGCTTGAACACACACGGGTTCTCCCGTGGCCTGTGCATTGGTTTCTGCGCTGGAAACTCCAGAGATCTAACGCAGTCCCCAGACAGACATTCAAAGCTTTGATCTACAAGGCATTCATGGTGTGAGTAACCACTGTTATTCTGCGATTCAACAGTCCCAGTTCTGACTGATTGATCCAGCTCATTCATAAAGCCGTGGTACGGTTCTAAATTGGCAGTGATCTGATTGAAGTAACACTCGGCCACTTCTGAATGTTTAAACGGCGGGCTGCTTCCGTTCTCCCCGCAGTGCATCGCAGGCATCGCTACACCTTCGTGACCATGACCAGCCATCTTCATCCCGTGAATCTGACCTTCTCTCTTGTTGTGGACGTCCACCGGCACGTCGTAACTTTTCATCATCTCCGCTCTGTAAAAAACGTCTTCCGTAAAACAgttcttttcttcttcctttAGCAAGATTGCACATTCTCTGACCTTCTTTGCGCTGGCATGGTTCTTCCCAAATATTTTGTCCACTGAACATTGGTCAAAAGCCATCTCTGTGTAACCTGAATGAGTCCCTTTGAAAGTCCATGTCTCTTTCTCGAACACTTCTACGTCTTTGCATCCGTTCGATGCTATCCTTTGGCTACTGGAGTGGGTCCGAACATAGCTGTAGGGGGCAGGTCGAGACATTTTGGGTCTGCCGACCGAGCCCCCACAGAAGCCTCTTAGGTCGAGCTCCCCTGTTGCCAGGGTAACAAGCCTGGGGTTTGTTTCGGACTGGTTTACATTGTACGAAGTACAGGGCAACTGGTAATATGACTGGGCGGCCATAGCTTGTAAGCCTTTGTcacatttttgccatttctcCACTTTCATAGGCGTCGATTCGAACAGGTAATAATCCTCGAGTTGAGCAAGTTCCTCTTTCAGGAGAGAGGTCATTACCTCCAAGTCGGAGGGCACCTGGACATCATGCTCCAAGGGCGAAGGCGGTATGGATGAACCGGGAGACGATTCTGTTGAGGTTGCTTGTGGGTAGGTGTCAAAATTTTCCGTCATCCAATCTATGTCCTATGTCCGTGTTAGCTCCGCCCCTCTTCTCTAGGATTGGCCGTCGTTAGCCAGTAGGAAAGAGAACATTCTGAGGTCGACTGTGCAAATGAGGAGAGTTTTCCCGAGAAGGGTCTATGCCGACTGAATGCTGTCTGTTTTGGCTGAAATGCTGAATTGCGATCAAAGCGTCGGAAGATGAGCGATGCGTCACAAAGCACAAAGATGGGAAAAagtaaaacctgaaaaaaaa

Function

NR:

description
uncharacterized protein LOC103039462

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU15575 True 1369 lncRNA 0.49 2 18835314 18837034

Neighbor

gene id symbol gene type direction distance location
LOC103038931 NA coding upstream 21725 18793023 ~ 18813589 (+)
colca2 NA coding upstream 123051 18706505 ~ 18712263 (+)
LOC107197920 adamts8,LOC108443347 coding upstream 135731 18674803 ~ 18699583 (+)
LOC103040662 LOC108443347 coding upstream 185740 18635912 ~ 18649574 (+)
LOC103036172 LOC108443349 coding upstream 325981 18461188 ~ 18509333 (+)
LOC107197927 NA coding downstream 218098 19055132 ~ 19068641 (+)
LOC103023445 med13,LOC108435287,LOC107729113,LOC105022380 coding downstream 236581 19073615 ~ 19117179 (+)
LOC103040710 LOC108435288 coding downstream 286236 19123270 ~ 19191589 (+)
LOC103046737 NA coding downstream 612528 19449562 ~ 19489254 (+)
LOC103047344 LOC107662768,LOC107597532,LOC107748584,LOC102234316,LOC107713435,LOC105903789 coding downstream 680579 19517613 ~ 19535102 (+)
G11559 NA non-coding upstream 7525 18827450 ~ 18827789 (+)
G11558 NA non-coding upstream 9602 18825499 ~ 18825712 (+)
G11557 NA non-coding upstream 10381 18824711 ~ 18824933 (+)
G11549 NA non-coding upstream 70290 18744957 ~ 18765024 (+)
G11547 NA non-coding upstream 103004 18732075 ~ 18732310 (+)
LOC111194223 NA non-coding downstream 1604 18838638 ~ 18873245 (+)
G11638 NA non-coding downstream 276946 19113980 ~ 19197419 (+)
G11658 LOC108435291,LOC107662773,LOC107586271,LOC107726100,LOC107597536 non-coding downstream 399879 19236913 ~ 19246515 (+)
G11671 NA non-coding downstream 437086 19274120 ~ 19274741 (+)
G11668 NA non-coding downstream 437847 19274881 ~ 19306567 (+)
LOC111194200 NA other upstream 1691966 17139425 ~ 17143348 (+)
ccdc47 ccdc47,LOC107674171,LOC107658463,LOC107729550,LOC107721963 other upstream 2534647 16224721 ~ 16300667 (+)
ddx42 ddx42 other upstream 2800030 16011694 ~ 16035284 (+)
G10879 NA other upstream 2874936 15952846 ~ 15960378 (+)
G10838 NA other upstream 3066071 15758762 ~ 15769243 (+)
LOC103043893 picalmb,LOC108435293,LOC107726102,LOC107662770,LOC107597534,LOC107729110,LOC107699893,LOC108278317,LOC105903807 other downstream 575773 19412807 ~ 19444831 (+)
LOC103033739 gkup,LOC108436512,LOC108278261,LOC106612544,LOC105024033,LOC107709108,LOC107717281,LOC107657260,LOC107586304 other downstream 2126015 20963049 ~ 20990064 (+)
trnan-guu NA other downstream 2139170 20976204 ~ 20976277 (+)
G12362 bco2b,LOC108436497,LOC107586303,LOC107657247 other downstream 2622816 21459850 ~ 21463649 (+)
spa17 spa17,LOC107709112,LOC107586300,LOC107657238,LOC107717271 other downstream 3463962 22300996 ~ 22384972 (+)

Expression


Co-expression Network