rps6kb1 (rps6kb1b,rps6kb1,LOC108443350,LOC107701421,LOC107597508)


Basic Information

Item Value
gene id rps6kb1
gene name rps6kb1b,rps6kb1,LOC108443350,LOC107701421,LOC107597508
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 18447497 ~ 18459827 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007231034.3
CTGTTGGGCTCGTTGTGCGCATGCTCGTGCCGTAGCCGGTCATGGCGACGGTGTGTTCATGTCCATGAGGCGGGAAGCGCAGCCTTCTCTCTCGGTCTCTCGGTTACGGTGGATCAGCGCAGCGAAATAAACGATGGCCGGGGTTTTCGACATCGATCTGGACCAGCCGGAGGAGAATGTCTCCGATGACGAGCTGGAGGAGGCACAGATCAATGACTTTATGGATCAGTGCAGTGGCTTTGAGTTCAATATGGATGACTGTGAGAAGATCGAGATATCTGAAGACAGTGTAAACCAAGGCACAGAGAGCATACGCCCGGAGTGCTTTGAGCTATTGCGAGTTTTAGGCAAAGGTGGCTATGGAAAGgttttccaaGTTCGGAAGGTGACCGGTGGAGGGTCCGGAAAAATATTTGCAATGAAAGTCTTAAAAAAGGCCATGATTGTCCGCAACGCCAAGGATACAGCCCATACCAAGGCTGAACGCAACATTTTGGAGGAAGTGAAGCATCCTTTCATTGTAGATCTTATCTATGCCTTTCAGACTGGCGGCAAGCTTTATCTCATCCTTGAATACCTTAGTGGTGGTGAGCTTTTTATGCAGTTGGAAAGGGAGGGGATTTTCATGGAAGACACAGCTTGCTTTTACTTGGCAGAAATTTCTATGGCCCTCGGCCATCTGCATCAGAAGGGCATCATCTACAGAGACCTTAAACCTGAGAACATCATGCTCAATAACCAAGGTCATGTGAAGTTGACTGATTTCGGACTGTGTAAAGAATCTATTCATGACGGGACGgtcacacacactttctgtgGCACTATAGAGTACATggCTCCAGAGATCTTGATGAGAAGTGGACACAATCGGGCTGTGGATTGGTGGAGTCTTGGAGCCCTTATGTATGACATGTTAACCGGGGCGccACCGTTTACTGGGGAGAACCGAAAGAAAACCATTGACAAAATTCTTAAATGCAAACTCAACCTCCCACCCTACCTCACACAAGAAGCCAGGGACCTACTCAAAAGGCTGCTGAAAAGAAGTGCCTCATCTCGGCTTGGAGCGGGACCTGGAGATGCAACAGAGGTGCAGACTCATCCCTTCTTCCGGCATATTAACTGGGACGACCTGCTTGCGCGTAAAGTAGAGCCACCGTTTAAGCCTTTCTTGCAATCTGCAGAGGATGTGAGCCAATTTGATTCTAAGTTCACCAGCCAGACTCCTGTCGATAGTCCCGATGACTCCACTCTCAGTGAAAGTGCAAATCAGGTCTTCCTGGGTTTTACGTATGTAGCTCCATCTGTGTTGGAAAACATTAAGGAGAAGTTCTCATTTGAGCCAAAAATTCGATCACCTCGCCGCTTTTTAGGAAGTCCAAGGACACCTGTGAGTCCGGTCAAGTTTGCTGGGGACTGCTGGCCACGAGGCCCTACCATGCCCGGAGCTTCCTCCCTCCAGTCTCCCACAGAACTTGCCATGGAGGTGTCCACTGTGGATCAGATGGACATTGCAGCCAGCGCCGAAGTCACCGCTCCACTGCCCATCCGGCAGCCCGCAGGCTCAATGATGGGCCCCTTCAAACAGCAGACGTACCCCGTCTTGTCCAAAAGGCCAGAGCATCTACGTATGAACCTATGACCATTAGCTTGACCTAGAGATTTACTTTTGCGTTCTGCATTTCTTTTATATGAATACTAGGGAACCATGGAAATTCCCCACCACCACACAACCTCCTCCTACTACTGTAGACTGCCCTTCACAATCTGACGAGCATGTGTGCTTCACTGAGCTTGAGAAACTACAACGGTTCCTCACATCCCAAATCCTCAGACCACATTGTTCTCAGATACTTCCTGTCATAACACATATCAGACGGATGAGCAGGATCGGGCCTTCTTTTTGgattaatgactttttttttttttttctttgtttattttttttttttctactacaTGATTGTACCATAAAAGGAATATGAAACACATGAACAAATCAAATCCAATACGACATTGCACTGTTCACTACATGTGCAGACTGTAGATGACGTGGTGCTCCCTGCAAGATGATCAAGTGCTATTGCGGAACGCTGTTCCGTGGgttgcttttgtgtttttacagtaTTGCTTGGAAAGCGGAATGGCTTTCCGTCTCTGAATGAATCATTGTTAATTGAACGAAGAGCTATGAGTATGCGGGGATTCCACCACGCAAAGGTTAAAAAAGCTGGCGTATGTCTTTATTCTCTTTGAACATTTAAGTACATCCCACAGTGCTATATAGATGATGGGTCAGTACACAAGAGcctcaataaaaaagaaagacattgacttttaaatcatttttttttttatttgcagcagGATCTGAACTACCTTTGCATTTGTGCTGAATGAAAAGGCATTTGTGTTCTCACCGCTACATATTTTCTGATGCAGACTGAATGGGTCTTTAAATTgagagggttttttttattagtatattaAAGCAGTCCTACTTTTCCGCTCTGTGTGCTGTTTGAGGATTCTCATTCCTTTACTAATCTGAAACGGAATTTGCAAGCCCCACCGCAAGTAGAACTGAGAAACTGAACACAGGAAGTGTTTGAAAAAAATCTTTCCCGTATGATTGTGATATCAGGAATTGATGTATGCTATTTGTAGTATTGcattacttaattacttgaatGAAACCTCTGGTGATAGAAACTTGACAACTCTTCACATTTAGTTCCTTTTTCCAGTGCAAAATTCAACTGCAGACAGAGTACCAGGACCCTGATTTTACCCTTGTCTGAATCAGTGAGTTAGTACTCACTTGGGAGTGTTTTCTATTTGGTTTCATTTTGCACagggaaaaatctgaaatgtcTAAAATGTGTTGAAACAAACCATGTGACCACTGGCTCCACTAAGTGGTCAGCCATGCCTGAGGAAGAGCAAGAaactaaatacagaaagaaggtTCTTGACTAGTTTTCATTTCTATGTAGCAGACATAGCATTTTTTCATAGCTCTGGCAAAAATCTGGGTGATACATTGCATTAAACTACACCTATAAAGCTCAAAATGTACTCAAAATGGGATTGAAGCCAGATTGCATTTTTAGCAACAACATAAAAACGCTTCAAAATGTGTTGGGTTCCCCAGCCTTGACCACCTCTTCTAAAGGGTCTGAGTAAGGTTGTTTTACTCTGCAtctgagtgtgattactgtagtCGCTTCTGCCCAAATGAAtgagttttatttaaataaattgtcttaataaagtgtttaaattattagtaaataacagtattaAAGAAAATACTGAACTTAACTAAAGTTCTCCAACATGCTGCTAACCTTATCTAGAATCTCACTAATTTCCTTTTTGCTGCTTTCTTTCAATGGCACTGTTATCAAAGGTGCCTTTAATGCCTTGCGTTATATTAAACTAACTTTTTAAAGGCAATGTGATTTTGTGCTTATATGTAATTGCCCCATGTCagtgaataattaattaattccgATTAAATGGAGAGTTAAACTGCATGTTTTTGTCCATACTGAGCTATGCAACTTCCAAATCAAACTGCACACAGACTGGAATagagacaatttaaaaaaatcaacctACAATTGACCCAAATTGAAGTGGGTTTTGGGAGTATTATGACTGTCCGTTGGCCTTCCTTGTGTTTCACAGGGATGTCTTTTATAAAAACATTGATGattaaagtgtttttcttttgtt
>XM_007231035.3
GGCTCGTTGTGCGCATGCTCGTGCCGTAGCCGGTCATGGCGACGGTGTGTTCATGTCCATGAGGCGGGAAGCGCAGCCTTCTCTCTCGGTCTCTCGGTTACGGTGGATCAGCGCAGCGAAATAAACGATGGCCGGGGTTTTCGACATCGATCTGGACCAGCCGGAGGAGAATGTCTCCGATGACGAGCTGGAGGAGCAATATGGATGACTGTGAGAAGATCGAGATATCTGAAGACAGTGTAAACCAAGGCACAGAGAGCATACGCCCGGAGTGCTTTGAGCTATTGCGAGTTTTAGGCAAAGGTGGCTATGGAAAGgttttccaaGTTCGGAAGGTGACCGGTGGAGGGTCCGGAAAAATATTTGCAATGAAAGTCTTAAAAAAGGCCATGATTGTCCGCAACGCCAAGGATACAGCCCATACCAAGGCTGAACGCAACATTTTGGAGGAAGTGAAGCATCCTTTCATTGTAGATCTTATCTATGCCTTTCAGACTGGCGGCAAGCTTTATCTCATCCTTGAATACCTTAGTGGTGGTGAGCTTTTTATGCAGTTGGAAAGGGAGGGGATTTTCATGGAAGACACAGCTTGCTTTTACTTGGCAGAAATTTCTATGGCCCTCGGCCATCTGCATCAGAAGGGCATCATCTACAGAGACCTTAAACCTGAGAACATCATGCTCAATAACCAAGGTCATGTGAAGTTGACTGATTTCGGACTGTGTAAAGAATCTATTCATGACGGGACGgtcacacacactttctgtgGCACTATAGAGTACATggCTCCAGAGATCTTGATGAGAAGTGGACACAATCGGGCTGTGGATTGGTGGAGTCTTGGAGCCCTTATGTATGACATGTTAACCGGGGCGccACCGTTTACTGGGGAGAACCGAAAGAAAACCATTGACAAAATTCTTAAATGCAAACTCAACCTCCCACCCTACCTCACACAAGAAGCCAGGGACCTACTCAAAAGGCTGCTGAAAAGAAGTGCCTCATCTCGGCTTGGAGCGGGACCTGGAGATGCAACAGAGGTGCAGACTCATCCCTTCTTCCGGCATATTAACTGGGACGACCTGCTTGCGCGTAAAGTAGAGCCACCGTTTAAGCCTTTCTTGCAATCTGCAGAGGATGTGAGCCAATTTGATTCTAAGTTCACCAGCCAGACTCCTGTCGATAGTCCCGATGACTCCACTCTCAGTGAAAGTGCAAATCAGGTCTTCCTGGGTTTTACGTATGTAGCTCCATCTGTGTTGGAAAACATTAAGGAGAAGTTCTCATTTGAGCCAAAAATTCGATCACCTCGCCGCTTTTTAGGAAGTCCAAGGACACCTGTGAGTCCGGTCAAGTTTGCTGGGGACTGCTGGCCACGAGGCCCTACCATGCCCGGAGCTTCCTCCCTCCAGTCTCCCACAGAACTTGCCATGGAGGTGTCCACTGTGGATCAGATGGACATTGCAGCCAGCGCCGAAGTCACCGCTCCACTGCCCATCCGGCAGCCCGCAGGCTCAATGATGGGCCCCTTCAAACAGCAGACGTACCCCGTCTTGTCCAAAAGGCCAGAGCATCTACGTATGAACCTATGACCATTAGCTTGACCTAGAGATTTACTTTTGCGTTCTGCATTTCTTTTATATGAATACTAGGGAACCATGGAAATTCCCCACCACCACACAACCTCCTCCTACTACTGTAGACTGCCCTTCACAATCTGACGAGCATGTGTGCTTCACTGAGCTTGAGAAACTACAACGGTTCCTCACATCCCAAATCCTCAGACCACATTGTTCTCAGATACTTCCTGTCATAACACATATCAGACGGATGAGCAGGATCGGGCCTTCTTTTTGgattaatgactttttttttttttttctttgtttattttttttttttctactacaTGATTGTACCATAAAAGGAATATGAAACACATGAACAAATCAAATCCAATACGACATTGCACTGTTCACTACATGTGCAGACTGTAGATGACGTGGTGCTCCCTGCAAGATGATCAAGTGCTATTGCGGAACGCTGTTCCGTGGgttgcttttgtgtttttacagtaTTGCTTGGAAAGCGGAATGGCTTTCCGTCTCTGAATGAATCATTGTTAATTGAACGAAGAGCTATGAGTATGCGGGGATTCCACCACGCAAAGGTTAAAAAAGCTGGCGTATGTCTTTATTCTCTTTGAACATTTAAGTACATCCCACAGTGCTATATAGATGATGGGTCAGTACACAAGAGcctcaataaaaaagaaagacattgacttttaaatcatttttttttttatttgcagcagGATCTGAACTACCTTTGCATTTGTGCTGAATGAAAAGGCATTTGTGTTCTCACCGCTACATATTTTCTGATGCAGACTGAATGGGTCTTTAAATTgagagggttttttttattagtatattaAAGCAGTCCTACTTTTCCGCTCTGTGTGCTGTTTGAGGATTCTCATTCCTTTACTAATCTGAAACGGAATTTGCAAGCCCCACCGCAAGTAGAACTGAGAAACTGAACACAGGAAGTGTTTGAAAAAAATCTTTCCCGTATGATTGTGATATCAGGAATTGATGTATGCTATTTGTAGTATTGcattacttaattacttgaatGAAACCTCTGGTGATAGAAACTTGACAACTCTTCACATTTAGTTCCTTTTTCCAGTGCAAAATTCAACTGCAGACAGAGTACCAGGACCCTGATTTTACCCTTGTCTGAATCAGTGAGTTAGTACTCACTTGGGAGTGTTTTCTATTTGGTTTCATTTTGCACagggaaaaatctgaaatgtcTAAAATGTGTTGAAACAAACCATGTGACCACTGGCTCCACTAAGTGGTCAGCCATGCCTGAGGAAGAGCAAGAaactaaatacagaaagaaggtTCTTGACTAGTTTTCATTTCTATGTAGCAGACATAGCATTTTTTCATAGCTCTGGCAAAAATCTGGGTGATACATTGCATTAAACTACACCTATAAAGCTCAAAATGTACTCAAAATGGGATTGAAGCCAGATTGCATTTTTAGCAACAACATAAAAACGCTTCAAAATGTGTTGGGTTCCCCAGCCTTGACCACCTCTTCTAAAGGGTCTGAGTAAGGTTGTTTTACTCTGCAtctgagtgtgattactgtagtCGCTTCTGCCCAAATGAAtgagttttatttaaataaattgtcttaataaagtgtttaaattattagtaaataacagtattaAAGAAAATACTGAACTTAACTAAAGTTCTCCAACATGCTGCTAACCTTATCTAGAATCTCACTAATTTCCTTTTTGCTGCTTTCTTTCAATGGCACTGTTATCAAAGGTGCCTTTAATGCCTTGCGTTATATTAAACTAACTTTTTAAAGGCAATGTGATTTTGTGCTTATATGTAATTGCCCCATGTCagtgaataattaattaattccgATTAAATGGAGAGTTAAACTGCATGTTTTTGTCCATACTGAGCTATGCAACTTCCAAATCAAACTGCACACAGACTGGAATagagacaatttaaaaaaatcaacctACAATTGACCCAAATTGAAGTGGGTTTTGGGAGTATTATGACTGTCCGTTGGCCTTCCTTGTGTTTCACAGGGATGTCTTTTATAAAAACATTGATGattaaagtgtttttcttttgtt

Function

symbol description
rps6kb1b Predicted to enable ribosomal protein S6 kinase activity. Predicted to be involved in TOR signaling and peptidyl-serine phosphorylation. Predicted to act upstream of or within protein phosphorylation and signal transduction. Predicted to be located in ribosome. Predicted to be active in cytoplasm and nucleus. Orthologous to human RPS6KB1 (ribosomal protein S6 kinase B1).
rps6kb1 Enables protein serine/threonine/tyrosine kinase activity. Involved in several processes, including G1/S transition of mitotic cell cycle; TOR signaling; and negative regulation of insulin receptor signaling pathway. Located in mitochondrion and nucleoplasm.

NR:

description
PREDICTED: ribosomal protein S6 kinase beta-1-like

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0007165 signal transduction biological_process
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG:

id description
K04688 RPS6KB; ribosomal protein S6 kinase beta

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007231034.3 True 3741 mRNA 0.43 15 18447497 18459827
XM_007231035.3 False 3691 mRNA 0.43 14 18447503 18459827

Neighbor

gene id symbol gene type direction distance location
vmp1 vmp1,LOC107554262,LOC107701424 coding upstream 12931 18394228 ~ 18434566 (+)
cltc cltc,cltcb,LOC108443353 coding upstream 59234 18358970 ~ 18388263 (+)
dhx40 dhx40,LOC107659925 coding upstream 95446 18341970 ~ 18352051 (+)
LOC103033316 NA coding upstream 111188 18328638 ~ 18336309 (+)
LOC103031729 NA coding upstream 183963 18240418 ~ 18263534 (+)
LOC103036172 LOC108443349 coding downstream 1361 18461188 ~ 18509333 (+)
LOC103040662 LOC108443347 coding downstream 176085 18635912 ~ 18649574 (+)
LOC107197920 adamts8,LOC108443347 coding downstream 214976 18674803 ~ 18699583 (+)
colca2 NA coding downstream 246678 18706505 ~ 18712263 (+)
LOC103038931 NA coding downstream 333196 18793023 ~ 18813589 (+)
G11409 NA non-coding upstream 11922 18435236 ~ 18435575 (+)
G11410 NA non-coding upstream 45573 18400788 ~ 18401924 (+)
G11395 NA non-coding upstream 86196 18309847 ~ 18361301 (+)
G11388 NA non-coding upstream 148701 18297929 ~ 18298796 (+)
G11381 NA non-coding upstream 164211 18279192 ~ 18283286 (+)
G11419 NA non-coding downstream 9599 18469426 ~ 18513082 (+)
G11507 NA non-coding downstream 91753 18551580 ~ 18552108 (+)
G11517 NA non-coding downstream 188052 18647879 ~ 18704378 (+)
G11545 NA non-coding downstream 268283 18728110 ~ 18728387 (+)
G11547 NA non-coding downstream 272248 18732075 ~ 18732310 (+)
LOC111194200 NA other upstream 1304149 17139425 ~ 17143348 (+)
ccdc47 ccdc47,LOC107674171,LOC107658463,LOC107729550,LOC107721963 other upstream 2146830 16224721 ~ 16300667 (+)
ddx42 ddx42 other upstream 2412213 16011694 ~ 16035284 (+)
G10879 NA other upstream 2487119 15952846 ~ 15960378 (+)
G10838 NA other upstream 2678254 15758762 ~ 15769243 (+)
LOC103043893 picalmb,LOC108435293,LOC107726102,LOC107662770,LOC107597534,LOC107729110,LOC107699893,LOC108278317,LOC105903807 other downstream 952980 19412807 ~ 19444831 (+)
LOC103033739 gkup,LOC108436512,LOC108278261,LOC106612544,LOC105024033,LOC107709108,LOC107717281,LOC107657260,LOC107586304 other downstream 2503222 20963049 ~ 20990064 (+)
trnan-guu NA other downstream 2516377 20976204 ~ 20976277 (+)
G12362 bco2b,LOC108436497,LOC107586303,LOC107657247 other downstream 3000023 21459850 ~ 21463649 (+)
spa17 spa17,LOC107709112,LOC107586300,LOC107657238,LOC107717271 other downstream 3841169 22300996 ~ 22384972 (+)

Expression


Co-expression Network