G11388


Basic Information

Item Value
gene id G11388
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 18297929 ~ 18298796 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU15342
ttttctatgtatttccagaaattaaataaataaaaaatatgaatgcataaaaaaaaatacataaagaaaCTGTAAAGGAGTATGTATAGTAACAAAGTAGTActcttttactttaatacataATTCGATATGTTTAATACGGGTTTGATAAAAATCACTGAGTGAATCAAGTGATTAAGCTGTCATATAAGAAGACATGTTGCTCCCGTTCTGCCTTTCACACTGCTGCCTCCCTACTTTTGACTGCTTTCAATAATATCTATATCAATATCTATATCAATACTGTACTTGTACTTTCAGTACTTAAGTAGTACAATAAAGTACTtgcagtacttaagtacacagAGTTTTGTCTTTTCAGGTCTCATCTTATTTGATagatagaaaaaataatattcaaattttattaaaagattcAATTTTAAAATTTTTCACTTCagtctataaatataaaatatgagaaaataaaaaatgaaacaaatgaatGACATTTAGTTTAGGCTGCTTctaaaaacataacataaagaGGTGACTAgtgatacaatatataaaaagtcacaatatttaaaatataataacaatcTGGTATAGTCATGCTGACAATTGACAGCTCTCAGTGTGTGCTCTGTGTACGCTCCATATGATGCCGTCGACGGAAGAAGCCACACttataagaacaatgatgatgatgattaacaGCAGAAACCCCCCAACGGAGCCACCTGCAATTACTGCAGTTGATTTCACAATCTTCTGCTTGATAACTACCACTTCCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU15342 True 776 lncRNA 0.28 2 18297929 18298796

Neighbor

gene id symbol gene type direction distance location
LOC103031729 NA coding upstream 34395 18240418 ~ 18263534 (+)
LOC103039111 tiam1b,LOC108411134,LOC107705640,LOC108278361,LOC107670130,LOC107669892 coding upstream 82047 18174076 ~ 18215882 (+)
LOC111194187 NA coding upstream 1345937 16948260 ~ 16951992 (+)
LOC111194175 NA coding upstream 1351490 16942304 ~ 16946439 (+)
meioc NA coding upstream 1873003 16410515 ~ 16424926 (+)
LOC103033316 NA coding downstream 29842 18328638 ~ 18336309 (+)
dhx40 dhx40,LOC107659925 coding downstream 43174 18341970 ~ 18352051 (+)
cltc cltc,cltcb,LOC108443353 coding downstream 60174 18358970 ~ 18388263 (+)
vmp1 vmp1,LOC107554262,LOC107701424 coding downstream 95432 18394228 ~ 18434566 (+)
rps6kb1 rps6kb1b,rps6kb1,LOC108443350,LOC107701421,LOC107597508 coding downstream 148701 18447497 ~ 18459827 (+)
G11381 NA non-coding upstream 14643 18279192 ~ 18283286 (+)
G11379 mrpl28,LOC107659942 non-coding upstream 25200 18266388 ~ 18272729 (+)
G11372 NA non-coding upstream 78870 18192446 ~ 18219059 (+)
G11375 NA non-coding upstream 89243 18206310 ~ 18208686 (+)
G11361 NA non-coding upstream 174833 18122809 ~ 18123096 (+)
G11395 NA non-coding downstream 11051 18309847 ~ 18361301 (+)
G11410 NA non-coding downstream 101992 18400788 ~ 18401924 (+)
G11409 NA non-coding downstream 136440 18435236 ~ 18435575 (+)
G11419 NA non-coding downstream 170630 18469426 ~ 18513082 (+)
G11507 NA non-coding downstream 252784 18551580 ~ 18552108 (+)
LOC111194200 NA other upstream 1154581 17139425 ~ 17143348 (+)
ccdc47 ccdc47,LOC107674171,LOC107658463,LOC107729550,LOC107721963 other upstream 1997262 16224721 ~ 16300667 (+)
ddx42 ddx42 other upstream 2262645 16011694 ~ 16035284 (+)
G10879 NA other upstream 2337551 15952846 ~ 15960378 (+)
G10838 NA other upstream 2528686 15758762 ~ 15769243 (+)
LOC103043893 picalmb,LOC108435293,LOC107726102,LOC107662770,LOC107597534,LOC107729110,LOC107699893,LOC108278317,LOC105903807 other downstream 1114011 19412807 ~ 19444831 (+)
LOC103033739 gkup,LOC108436512,LOC108278261,LOC106612544,LOC105024033,LOC107709108,LOC107717281,LOC107657260,LOC107586304 other downstream 2664253 20963049 ~ 20990064 (+)
trnan-guu NA other downstream 2677408 20976204 ~ 20976277 (+)
G12362 bco2b,LOC108436497,LOC107586303,LOC107657247 other downstream 3161054 21459850 ~ 21463649 (+)
spa17 spa17,LOC107709112,LOC107586300,LOC107657238,LOC107717271 other downstream 4002200 22300996 ~ 22384972 (+)

Expression


Co-expression Network