G11545


Basic Information

Item Value
gene id G11545
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 18728110 ~ 18728387 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU15557
ttttatttttgttattttgagtacaattgagtacaagctctgataaaagtctataaatctgtacactgcagttgcagtaagtcaaagataggtggtgcagtgttgttgtgcattgagactaatatttctgctcagcaagtgctgattgtttttattttgcttttatttcatatttgttttatttcatatacatttttatatttcataaaaatcccATGTGGGATCTATCGGAATAAAATACCCGGAAAAAGagtgttttgtcatttggtgtgcgtcct

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU15557 True 278 lncRNA 0.48 1 18728110 18728387

Neighbor

gene id symbol gene type direction distance location
colca2 NA coding upstream 15847 18706505 ~ 18712263 (+)
LOC107197920 adamts8,LOC108443347 coding upstream 28527 18674803 ~ 18699583 (+)
LOC103040662 LOC108443347 coding upstream 78536 18635912 ~ 18649574 (+)
LOC103036172 LOC108443349 coding upstream 218777 18461188 ~ 18509333 (+)
rps6kb1 rps6kb1b,rps6kb1,LOC108443350,LOC107701421,LOC107597508 coding upstream 268283 18447497 ~ 18459827 (+)
LOC103038931 NA coding downstream 64636 18793023 ~ 18813589 (+)
LOC107197927 NA coding downstream 326745 19055132 ~ 19068641 (+)
LOC103023445 med13,LOC108435287,LOC107729113,LOC105022380 coding downstream 345228 19073615 ~ 19117179 (+)
LOC103040710 LOC108435288 coding downstream 394883 19123270 ~ 19191589 (+)
LOC103046737 NA coding downstream 721175 19449562 ~ 19489254 (+)
G11517 NA non-coding upstream 23732 18647879 ~ 18704378 (+)
G11507 NA non-coding upstream 176002 18551580 ~ 18552108 (+)
G11419 NA non-coding upstream 215028 18469426 ~ 18513082 (+)
G11409 NA non-coding upstream 292535 18435236 ~ 18435575 (+)
G11410 NA non-coding upstream 326186 18400788 ~ 18401924 (+)
G11547 NA non-coding downstream 3688 18732075 ~ 18732310 (+)
G11549 NA non-coding downstream 16570 18744957 ~ 18765024 (+)
G11557 NA non-coding downstream 96324 18824711 ~ 18824933 (+)
G11558 NA non-coding downstream 97112 18825499 ~ 18825712 (+)
G11559 NA non-coding downstream 99063 18827450 ~ 18827789 (+)
LOC111194200 NA other upstream 1584762 17139425 ~ 17143348 (+)
ccdc47 ccdc47,LOC107674171,LOC107658463,LOC107729550,LOC107721963 other upstream 2427443 16224721 ~ 16300667 (+)
ddx42 ddx42 other upstream 2692826 16011694 ~ 16035284 (+)
G10879 NA other upstream 2767732 15952846 ~ 15960378 (+)
G10838 NA other upstream 2958867 15758762 ~ 15769243 (+)
LOC103043893 picalmb,LOC108435293,LOC107726102,LOC107662770,LOC107597534,LOC107729110,LOC107699893,LOC108278317,LOC105903807 other downstream 684420 19412807 ~ 19444831 (+)
LOC103033739 gkup,LOC108436512,LOC108278261,LOC106612544,LOC105024033,LOC107709108,LOC107717281,LOC107657260,LOC107586304 other downstream 2234662 20963049 ~ 20990064 (+)
trnan-guu NA other downstream 2247817 20976204 ~ 20976277 (+)
G12362 bco2b,LOC108436497,LOC107586303,LOC107657247 other downstream 2731463 21459850 ~ 21463649 (+)
spa17 spa17,LOC107709112,LOC107586300,LOC107657238,LOC107717271 other downstream 3572609 22300996 ~ 22384972 (+)

Expression


Co-expression Network