LOC103025032 (LOC108435274)


Basic Information

Item Value
gene id LOC103025032
gene name LOC108435274
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 19756536 ~ 19762235 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022677886.1
ATGTTTCAGTTGTTGTTAAGCATCTACACAGCATGTCCTGTTTACCCTTGGTTAGGTGGAGTGTGGTCATGGGAGGCAGTGGTGGTGAAGAGCTCGGTGTTCGCTCGTTCTGGATCCTCTGCTGAGCTCTCCTGCAGTTACAGCACACACGCTGCACAGGGCTTCACTCTGGAGTGGAGGTACGCTGCCCCAGGATCACCTGCATTCCAGGCCAAGAGGGTGTTGTACTATAATGGACATCTGTACTGGGTGGATTCTTGGGAGAGCAGGATGGCTTTAGTGCAGAATCCTCCAACCTCTGGTGTTGCTTCTGTGAAGATCCTCAGTGTTCAGCCCTCAGACGCTGGTCTTTACATCTGTGATGTCACCAATCCAAATGACTGGTCTGGCAGCGGACAGGGCCTGGTCAACCTGACTGTGTTAGTGCCTCCATCTGTGCCCGACTGTCAGCTGAGTGGCAGCACCTACATGGGGAATGATGTTACTCTGACATGTAAGAGTTCTCAGGGAGTCCCTGCACCCATCTACTCCTGGAGCCGAGAGAAAGGTGCAGCCCCCCTGCCCCCCACCAGCATGGTAGAAGATCAGCGTAGCGGTTCACTGATGCTGACCAACCTGACCGCTGCCTTTACTGGAACATACACCTGCAGAGCCTCCAATGATCTGGGCGAGGCAGCGTGCAGCATTGCTGTAAAAGTGGCACACGGTGACACAGCAGCGGTGGTTGGTGGGGTTCTGATGGGTGTGTTCCTGGTTGTTCTGCTGATCATGGCTGTGGTGATCTacctctgctgctgctacagGAAGAGAGCTCACCAGCACACAGAGAAGAACGAGCTGAGGCGGATGAATGTAGGTCCAGCAGGCCGGCGCAGGTCAAAGGGTCCTCTGCTTTCTGATGAAAATCACCCACCACTCAGAGTCTCTCACTTCAGCCCACTGGTGTAAGAGCAGCGTTCATAATCCTGTCTCTACTGTACATTAACCAACCAAATTATTATCTGTAATTTGATTTTCTAtagtgtttagtttttttgaacAGGATATTTGAAATAGTTCttgtgattttgtttttgtgaattttgtaataaatgtaaaatctcCAGATTTTAATGTGCACTTTTACATTTGCC

Function

NR:

description
PREDICTED: V-set and immunoglobulin domain-containing protein 2-like, partial

GO:

id name namespace
GO:0097324 melanocyte migration biological_process
GO:0050934 late stripe melanocyte differentiation biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022677886.1 True 1133 mRNA 0.50 6 19756536 19762235

Neighbor

gene id symbol gene type direction distance location
LOC103047658 esamb,LOC108435282 coding upstream 2583 19680874 ~ 19753953 (+)
LOC103047344 LOC107662768,LOC107597532,LOC107748584,LOC102234316,LOC107713435,LOC105903789 coding upstream 221434 19517613 ~ 19535102 (+)
LOC103046737 NA coding upstream 267282 19449562 ~ 19489254 (+)
LOC103040710 LOC108435288 coding upstream 564947 19123270 ~ 19191589 (+)
LOC103023445 med13,LOC108435287,LOC107729113,LOC105022380 coding upstream 639357 19073615 ~ 19117179 (+)
thyn1 thyn1,LOC107582572 coding downstream 11503 19773738 ~ 19777715 (+)
igsf9b igsf9b,LOC107748591,LOC107662765,LOC107713446 coding downstream 64045 19826280 ~ 19939463 (+)
LOC103025662 arhgap32,LOC108435303 coding downstream 190218 19952453 ~ 20015422 (+)
LOC103035031 LOC108435305 coding downstream 760643 20522878 ~ 20731709 (+)
LOC103032372 zbtb16b,LOC108435307,LOC108278332,LOC107699906,LOC107597519,LOC107701406,LOC107713452,LOC107582577,LOC107748597 coding downstream 983794 20746029 ~ 20844121 (+)
G11703 NA non-coding upstream 87292 19666960 ~ 19669244 (+)
G11678 NA non-coding upstream 220156 19535675 ~ 19536380 (+)
G11679 NA non-coding upstream 221009 19391303 ~ 19535527 (+)
G11673 NA non-coding upstream 396432 19359898 ~ 19360104 (+)
G11668 NA non-coding upstream 449969 19274881 ~ 19306567 (+)
LOC111193550 NA non-coding downstream 284592 20046827 ~ 20063468 (+)
G11856 NA non-coding downstream 296301 20058536 ~ 20147053 (+)
G11891 NA non-coding downstream 684159 20446394 ~ 20488144 (+)
G12023 NA non-coding downstream 766812 20529047 ~ 20529437 (+)
G12027 NA non-coding downstream 800538 20562773 ~ 20619977 (+)
LOC103043893 picalmb,LOC108435293,LOC107726102,LOC107662770,LOC107597534,LOC107729110,LOC107699893,LOC108278317,LOC105903807 other upstream 311705 19412807 ~ 19444831 (+)
LOC111194200 NA other upstream 2613188 17139425 ~ 17143348 (+)
ccdc47 ccdc47,LOC107674171,LOC107658463,LOC107729550,LOC107721963 other upstream 3455869 16224721 ~ 16300667 (+)
ddx42 ddx42 other upstream 3721252 16011694 ~ 16035284 (+)
G10879 NA other upstream 3796158 15952846 ~ 15960378 (+)
LOC103033739 gkup,LOC108436512,LOC108278261,LOC106612544,LOC105024033,LOC107709108,LOC107717281,LOC107657260,LOC107586304 other downstream 1200814 20963049 ~ 20990064 (+)
trnan-guu NA other downstream 1213969 20976204 ~ 20976277 (+)
G12362 bco2b,LOC108436497,LOC107586303,LOC107657247 other downstream 1697615 21459850 ~ 21463649 (+)
spa17 spa17,LOC107709112,LOC107586300,LOC107657238,LOC107717271 other downstream 2538761 22300996 ~ 22384972 (+)
oaf oaf,oafa,LOC107696006,LOC107709135,LOC107586231,LOC107657251,LOC107717291 other downstream 2711417 22473652 ~ 22517780 (+)

Expression


Co-expression Network