LOC111193550


Basic Information

Item Value
gene id LOC111193550
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 20046827 ~ 20063468 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002650594.1
AAGGCAGAAGACAGCCGATGGCAACCCAACCCATGGATCTTGTGATCTTGTAAACAGCTAAAAGATGAATCTGCTCCTACTGTAAGGAGTGTCTGCAGTGGCTGCGTTCCAAAGTCTAAGCTGCATCCATAGAAAGCTGTTCCAGACTGAAGGATCCTTCCTATACAGCCAAGAAAGGTAGGACAACGTTCAGAGTGATTTTAAAGGACTCAACTAATGTATCCTTtaggggtgtaacagtacagaaaattGTTTGGTACATTTTCGGTAcgattgatgaaaaaaaaattaagaggatGGGTATTCTGTTtagcctcacctttattaacttcatattAACAATTAAACTTctttataaccatgtttttgttttacacatCTCTATATGTTTATACATATACGTTTACAGTAGCctccaaactgaaaaaaaaaaaaaacaaaaaaaacaatgtgctttaaaaaaacttcAGTAATGGATTGGGATCTGTCTGATTTCACATCTAGAGGctgattatatactttttttgtgtgtttatacttcTGTATGCGTGTATCAGTGGCTCTGCATCACTCTGTGAAGGCAGGAATGTGTGGGCGGGAACGTGAGGCCCAGAGGACCAATCACAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002650594.1 True 627 lncRNA 0.38 2 20046827 20063468

Neighbor

gene id symbol gene type direction distance location
LOC103025662 arhgap32,LOC108435303 coding upstream 31405 19952453 ~ 20015422 (+)
igsf9b igsf9b,LOC107748591,LOC107662765,LOC107713446 coding upstream 107364 19826280 ~ 19939463 (+)
thyn1 thyn1,LOC107582572 coding upstream 269112 19773738 ~ 19777715 (+)
LOC103025032 LOC108435274 coding upstream 284592 19756536 ~ 19762235 (+)
LOC103047658 esamb,LOC108435282 coding upstream 292874 19680874 ~ 19753953 (+)
LOC103035031 LOC108435305 coding downstream 459410 20522878 ~ 20731709 (+)
LOC103032372 zbtb16b,LOC108435307,LOC108278332,LOC107699906,LOC107597519,LOC107701406,LOC107713452,LOC107582577,LOC107748597 coding downstream 682561 20746029 ~ 20844121 (+)
tmprss5 tmprss5,LOC107713421,LOC107717179 coding downstream 788714 20852182 ~ 20900847 (+)
LOC103032051 NA coding downstream 808848 20872316 ~ 20874119 (+)
LOC111193556 NA coding downstream 813441 20876909 ~ 20879031 (+)
G11703 NA non-coding upstream 377583 19666960 ~ 19669244 (+)
G11678 NA non-coding upstream 510447 19535675 ~ 19536380 (+)
G11679 NA non-coding upstream 511300 19391303 ~ 19535527 (+)
G11673 NA non-coding upstream 686723 19359898 ~ 19360104 (+)
G11668 NA non-coding upstream 740260 19274881 ~ 19306567 (+)
G11891 NA non-coding downstream 382926 20446394 ~ 20488144 (+)
G12023 NA non-coding downstream 465579 20529047 ~ 20529437 (+)
G12027 NA non-coding downstream 499305 20562773 ~ 20619977 (+)
G12034 NA non-coding downstream 607566 20671034 ~ 20710678 (+)
G12038 NA non-coding downstream 664075 20727543 ~ 20767399 (+)
LOC103043893 picalmb,LOC108435293,LOC107726102,LOC107662770,LOC107597534,LOC107729110,LOC107699893,LOC108278317,LOC105903807 other upstream 601996 19412807 ~ 19444831 (+)
LOC111194200 NA other upstream 2903479 17139425 ~ 17143348 (+)
ccdc47 ccdc47,LOC107674171,LOC107658463,LOC107729550,LOC107721963 other upstream 3746160 16224721 ~ 16300667 (+)
ddx42 ddx42 other upstream 4011543 16011694 ~ 16035284 (+)
G10879 NA other upstream 4086449 15952846 ~ 15960378 (+)
LOC103033739 gkup,LOC108436512,LOC108278261,LOC106612544,LOC105024033,LOC107709108,LOC107717281,LOC107657260,LOC107586304 other downstream 899581 20963049 ~ 20990064 (+)
trnan-guu NA other downstream 912736 20976204 ~ 20976277 (+)
G12362 bco2b,LOC108436497,LOC107586303,LOC107657247 other downstream 1396382 21459850 ~ 21463649 (+)
spa17 spa17,LOC107709112,LOC107586300,LOC107657238,LOC107717271 other downstream 2237528 22300996 ~ 22384972 (+)
oaf oaf,oafa,LOC107696006,LOC107709135,LOC107586231,LOC107657251,LOC107717291 other downstream 2410184 22473652 ~ 22517780 (+)

Expression


Co-expression Network