G10909


Basic Information

Item Value
gene id G10909
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 16302703 ~ 16304584 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU14744
tcctgttaatcattcaatattcatcctgttaatcattcaatcagTATTTTATCATTGAGTGTTATGTGAACTTATATTCTCTGATAAGGCCATTCATTCAGACTTAAGGGCAAAGATTATAAAAGCAGGGGTCTGCCTGGAGACTAGCGGGTCATAGCAAATGGTGTTttctgatttatgaattattctctCCTAAGGAATGGAAATTAAGTTTGCCTGGAAACTGTTTTGTCATAGTAAAATAGAGCTTTCTGATTCATGAattattctctcctaaaaagcttATCTTCTGGTACGTGCAGTTTCTGttcctctttttatatttggtaGTGACCTGTTCCAAAACAGATCACGAGGGGATTGCCTCATGTATGCAGGGGGGGACTGTATAAAAATGCCCAGTCGACACAGAAAGGGGCTTTTTCCGACTTTCCTGACTACTCTCATTCTTCATCCATTGCTTTcgctttatttttgctttttgcaacttcaaaataaaaaccttctcTTTTTGGCATCCCGGCTCGTTGACTGTCTTTGTGAGAAAACGGAGGGCACAGTCTGACGGGGCTGTGAGCACATAGGCACAGCGATAGAGTCGCGAACCTGCTGGTAAAGAAAAATGGATCGATCCCTCATCTGTGTGTTGAGAGCGGGGGGTTTCGGGCCAGAGGGGAAACTTtgttaaagtacatttttctaAGGGGAAATGAACGGGGATGCCGAAAGACAAGTGTCTTATAAATTTTTTTGCtatctaaatttttttttggtgctgtGTGTTTGCCTCAATCCAAGATTTGGGGCATAGCCCAGAAAAAACTGGTTCCTGGGGCCGGATAACCCGCCTTTGTATGACGATATTTAAAGGTTAAAGATTTTTTCCCCTGGTTTTTTGTGAGAAAACGGAGGGCACAGTCTGACGGGGCTGTGAGCACATAGGCACAGCGATAGAGTCGCGAACCTGCTGGTAAAGAAAAATGGATCGATCCCTCATCTGTGTGTTGAGAGCGGGGGGTTTCGGGCCAGAGGGGAAACTTtgttaaagtacatttttctaAGGGGAAATGAACGGGGATGCCGAAAGACAAGTGTCTTATAAATTTTTTTGCtatctaaatttttttttggctttgctCCGCACCGCTTCCGTTCTTTTCTCACTTCTAAATTTTTCTGTCTGGTTTTTATCCTCTCGTCTTTTCCTGTTTAGAGTGAGTGAAACAGAAGTGTGTGCGACAGTGCGACTgacagagaggaaaagaaaagggtGTACGAGTGTCTGTTAAAGGGATTAAAAGTGTACCtgtgagtgtgaaagtgtgCGGGTCCAGTTttcctgagagagaaacagaaaatgtgtATCTTGTGTTGGCGGAgagaaagaatgtgtgtgtggcagtgagtgagaaagtgtaTGGCAGCgaattaaagagtgtgtgtacgAAGTCGTGAGTGACAACGAAATAGgaaatggatatatatatatatatatatatatatatatatatatatatatatata
>TU14745
tcctgttaatcattcaatattcatcctgttaatcattcaatcagTATTTTATCATTGAGTGTTATGTGAACTTATATTCTCTGATAAGGCCATTCATTCAGACTTAAGGGCAAAGATTATAAAAGCAGGGGTCTGCCTGGAGACTAGCGGGTCATAGCAAATGGTGTTttctgatttatgaattattctctCCTAAGGAATGGAAATTAAGTTTGCCTGGAAACTGTTTTGTCATAGTAAAATAGAGCTTTCTGATTCATGAattattctctcctaaaaagcttATCTTCTGGTACGTGCAGTTTCTGttcctctttttatatttggtaGTGACCTGTTCCAAAACAGATCACGAGGGGATTGCCTCATGTATGCAGGGGGGGACTGTATAAAAATGCCCAGTCGACACAGAAAGGGGCTTTTTCCGACTTTCCTGACTACTCTCATTCTTCATCCATTGCTTTcgctttatttttgctttttgcaacttcaaaataaaaaccttctcTTTTTGGCATCCCGGCTCGTTGACTGTCTTTGTGAGAAAACGGAGGGCACAGTCTGACGGGGCTGTGAGCACATAGGCACAGCGATAGAGTCGCGAACCTGCTGGTAAAGAAAAATGGATCGATCCCTCATCTGTGTGTTGAGAGCGGGGGGTTTCGGGCCAGAGGGGAAACTTtgttaaagtacatttttctaAGGGGAAATGAACGGGGATGCCGAAAGACAAGTGTCTTATAAATTTTTTTGCtatctaaatttttttttggtgctgtGTGTTTGCCTCAATCCAAGATTTGGGGCATAGCCCAGAAAAAACTGGTTCCTGGGGCCGGATAACCCGCCTTTGTATGACGATATTTAAAGGTTAAAGATTTTTTCCCCTGGTTTTTTGTGAGAAAACGGAGGGCACAGTCTGACGGGGCTGTGAGCACATAGGCACAGCGATAGAGTCGCGAACCTGCTGGTAAAGAAAAATGGATCGATCCCTCATCTGTGTGTTGAGAGCGGGGGGTTTCGGGCCAGAGGGGAAACTTtgttaaagtacatttttctaAGGGGAAATGAACGGGGATGCCGAAAGACAAGTGTCTTATAAATTTTTTTGCtatctaaatttttttttggctttgctCCGCACCGCTTCCGTTCTTTTCTCACTTCTAAATTTTTCTGTCTGGTTTTTATCCTCTCGTCTTTTCCTGTTTAGAGTGAGTGAAACAGAAGTGTGTGCGACAGTGCGACTgacagagaggaaaagaaaagggtGTACGAGTGTCTGTTAAAGGGATTAAAAGTGTACCtgtgagtgtgaaagtgtgCGGGTCCAGTTttcctgagagagaaacagaaaatgtgtATCTTGTGTTGGCGGAgagaaagaatgtgtgtgtggcagtgagtgagaaagtgtaTGGCAGCgaattaaagagtgtgtgtacgAAGTCGTGAGTGACAACGAAATAGgaaatggatatatatatatatatatatatatatatatatatatatatatatata
>TU14746
tcctgttaatcattcaatattcatcctgttaatcattcaatcagTATTTTATCATTGAGTGTTATGTGAACTTATATTCTCTGATAAGGCCATTCATTCAGACTTAAGGGCAAAGATTATAAAAGCAGGGGTCTGCCTGGAGACTAGCGGGTCATAGCAAATGGTGTTttctgatttatgaattattctctCCTAAGGAATGGAAATTAAGTTTGCCTGGAAACTGTTTTGTCATAGTAAAATAGAGCTTTCTGATTCATGAattattctctcctaaaaagcttATCTTCTGGTACGTGCAGTTTCTGttcctctttttatatttggtaGTGACCTGTTCCAAAACAGATCACGAGGGGATTGCCTCATGTATGCAGGGGGGGACTGTATAAAAATGCCCAGTCGACACAGAAAGGGGCTTTTTCCGACTTTCCTGACTACTCTCATTCTTCATCCATTGCTTTcgctttatttttgctttttgcaacttcaaaataaaaaccttctcTTTTTGGCATCCCGGCTCGTTGACTGTCTTTGTGAGAAAACGGAGGGCACAGTCTGACGGGGCTGTGAGCACATAGGCACAGCGATAGAGTCGCGAACCTGCTGGTAAAGAAAAATGGATCGATCCCTCATCTGTGTGTTGAGAGCGGGGGGTTTCGGGCCAGAGGGGAAACTTtgttaaagtacatttttctaAGGGGAAATGAACGGGGATGCCGAAAGACAAGTGTCTTATAAATTTTTTTGCtatctaaatttttttttggtgctgtGTGTTTGCCTCAATCCAAGATTTGGGGCATAGCCCAGAAAAAACTGGTTCCTGGGGCCGGATAACCCGCCTTTGTATGACGATATTTAAAGGTTAAAGATTTTTTCCCCTGGTTTTTTGTGAGAAAACGGAGGGCACAGTCTGACGGGGCTGTGAGCACATAGGCACAGCGATAGAGTCGCGAACCTGCTGGTAAAGAAAAATGGATCGATCCCTCATCTGTGTGTTGAGAGCGGGGGGTTTCGGGCCAGAGGGGAAACTTtgttaaagtacatttttctaAGGGGAAATGAACGGGGATGCCGAAAGACAAGTGTCTTATAAATTTTTTTGCtatctaaatttttttttggctttgctCCGCACCGCTTCCGTTCTTTTCTCACTTCTAAATTTTTCTGTCTGGTTTTTATCCTCTCGTCTTTTCCTGTTTAGAGTGAGTGAAACAGAAGTGTGTGCGACAGTGCGACTgacagagaggaaaagaaaagggtGTACGAGTGTCTGTTAAAGGGATTAAAAGTGTACCtgtgagtgtgaaagtgtgCGGGTCCAGTTttcctgagagagaaacagaaaatgtgtATCTTGTGTTGGCGGAgagaaagaatgtgtgtgtggcagtgagtgagaaagtgtaTGGCAGCgaattaaagagtgtgtgtacgAAGTCGTGAGTGACAACGAAATAGgaaatggatatatatatatatatatatatatatatatatatatatatatatata
>TU14747
tcctgttaatcattcaatattcatcctgttaatcattcaatcagTATTTTATCATTGAGTGTTATGTGAACTTATATTCTCTGATAAGGCCATTCATTCAGACTTAAGGGCAAAGATTATAAAAGCAGGGGTCTGCCTGGAGACTAGCGGGTCATAGCAAATGGTGTTttctgatttatgaattattctctCCTAAGGAATGGAAATTAAGTTTGCCTGGAAACTGTTTTGTCATAGTAAAATAGAGCTTTCTGATTCATGAattattctctcctaaaaagcttATCTTCTGGTACGTGCAGTTTCTGttcctctttttatatttggtaGTGACCTGTTCCAAAACAGATCACGAGGGGATTGCCTCATGTATGCAGGGGGGGACTGTATAAAAATGCCCAGTCGACACAGAAAGGGGCTTTTTCCGACTTTCCTGACTACTCTCATTCTTCATCCATTGCTTTcgctttatttttgctttttgcaacttcaaaataaaaaccttctcTTTTTGGCATCCCGGCTCGTTGACTGTCTTTGTGAGAAAACGGAGGGCACAGTCTGACGGGGCTGTGAGCACATAGGCACAGCGATAGAGTCGCGAACCTGCTGGTAAAGAAAAATGGATCGATCCCTCATCTGTGTGTTGAGAGCGGGGGGTTTCGGGCCAGAGGGGAAACTTtgttaaagtacatttttctaAGGGGAAATGAACGGGGATGCCGAAAGACAAGTGTCTTATAAATTTTTTTGCtatctaaatttttttttggtgctgtGTGTTTGCCTCAATCCAAGATTTGGGGCATAGCCCAGAAAAAATGGTTCCTGGGGCCGGATAACCCGCCTTTGTATGACGATATTTAAAGGTTAAAGATTTTTTCCCCTGGTTTTTTGTGAGAAAACGGAGGGCACAGTCTGACGGGGCTGTGAGCACATAGGCACAGCGATAGAGTCGCGAACCTGCTGGTAAAGAAAAATGGATCGATCCCTCATCTGTGTGTTGAGAGCGGGGGGTTTCGGGCCAGAGGGGAAACTTtgttaaagtacatttttctaAGGGGAAATGAACGGGGATGCCGAAAGACAAGTGTCTTATAAATTTTTTTGCtatctaaatttttttttggctttgctCCGCACCGCTTCCGTTCTTTTCTCACTTCTAAATTTTTCTGTCTGGTTTTTATCCTCTCGTCTTTTCCTGTTTAGAGTGAGTGAAACAGAAGTGTGTGCGACAGTGCGACTgacagagaggaaaagaaaagggtGTACGAGTGTCTGTTAAAGGGATTAAAAGTGTACCtgtgagtgtgaaagtgtgCGGGTCCAGTTttcctgagagagaaacagaaaatgtgtATCTTGTGTTGGCGGAgagaaagaatgtgtgtgtggcagtgagtgagaaagtgtaTGGCAGCgaattaaagagtgtgtgtacgAAGTCGTGAGTGACAACGAAATAGgaaatggatatatatatatatatatatatatatatatatatatatatatatata

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU14744 True 1524 lncRNA 0.41 2 16302703 16304584
TU14745 False 1524 lncRNA 0.41 2 16302703 16304584
TU14746 False 1524 lncRNA 0.41 2 16302703 16304584
TU14747 False 1523 lncRNA 0.49 2 16302703 16304584

Neighbor

gene id symbol gene type direction distance location
LOC103035750 kcnh6a,kcnh6,LOC108427397,LOC107674162,LOC107570755,LOC107583039,LOC107658465 coding upstream 35506 16185008 ~ 16267197 (+)
gfap gfap coding upstream 130323 16155230 ~ 16172380 (+)
map3k3 map3k3,LOC107674169,LOC107570753,LOC107658467 coding upstream 167329 16090023 ~ 16135374 (+)
limd2 limd2,LOC107721965,LOC107674139,LOC107658411 coding upstream 222009 16046254 ~ 16080694 (+)
LOC103033944 LOC103033944 coding upstream 262491 16037808 ~ 16040212 (+)
meioc NA coding downstream 105931 16410515 ~ 16424926 (+)
LOC111194175 NA coding downstream 637720 16942304 ~ 16946439 (+)
LOC111194187 NA coding downstream 643676 16948260 ~ 16951992 (+)
LOC103039111 tiam1b,LOC108411134,LOC107705640,LOC108278361,LOC107670130,LOC107669892 coding downstream 1869492 18174076 ~ 18215882 (+)
LOC103031729 NA coding downstream 1935834 18240418 ~ 18263534 (+)
G10903 NA non-coding upstream 87081 16181950 ~ 16215622 (+)
G10882 NA non-coding upstream 320125 15979023 ~ 15982578 (+)
G10877 NA non-coding upstream 351527 15950934 ~ 15951176 (+)
G10865 NA non-coding upstream 381273 15863842 ~ 15921430 (+)
G10843 NA non-coding upstream 549435 15751508 ~ 15753268 (+)
G10910 NA non-coding downstream 2444 16307028 ~ 16311890 (+)
G10913 NA non-coding downstream 9235 16313819 ~ 16316489 (+)
G10914 NA non-coding downstream 12044 16316628 ~ 16318015 (+)
G10915 NA non-coding downstream 13572 16318156 ~ 16318422 (+)
G10916 NA non-coding downstream 14242 16318826 ~ 16319572 (+)
ccdc47 ccdc47,LOC107674171,LOC107658463,LOC107729550,LOC107721963 other upstream 2036 16224721 ~ 16300667 (+)
LOC107197663 NA other upstream 251778 14801118 ~ 16050925 (+)
ddx42 ddx42 other upstream 267419 16011694 ~ 16035284 (+)
G10879 NA other upstream 342325 15952846 ~ 15960378 (+)
G10838 NA other upstream 533460 15758762 ~ 15769243 (+)
LOC111194200 NA other downstream 834841 17139425 ~ 17143348 (+)
LOC103043893 picalmb,LOC108435293,LOC107726102,LOC107662770,LOC107597534,LOC107729110,LOC107699893,LOC108278317,LOC105903807 other downstream 3108223 19412807 ~ 19444831 (+)
LOC103033739 gkup,LOC108436512,LOC108278261,LOC106612544,LOC105024033,LOC107709108,LOC107717281,LOC107657260,LOC107586304 other downstream 4658465 20963049 ~ 20990064 (+)
trnan-guu NA other downstream 4671620 20976204 ~ 20976277 (+)
G12362 bco2b,LOC108436497,LOC107586303,LOC107657247 other downstream 5155266 21459850 ~ 21463649 (+)

Expression


Co-expression Network