G10706


Basic Information

Item Value
gene id G10706
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 15136544 ~ 15163835 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU14450
tCAGGTTTGCTGGTTTTCCCACCATTTTCATTGAACGTTTGAAcgttgtctgtttttttatttgcgtTTGTCAAATACAGGAGGGCTCATGGTCAGATGAGGGACTGGGAGCTTGAGACTGAAGCAGCTGTACAATATTTACAAAGAGATCAAATGAATGGGCAAAcctccaaaataataattataattataataataagaagaataattATCATAGTAAACGAccaacagataaaaaaaaacaaacacagacgatttcacactttaaaaatggttacaTCCCTCTGCACCATCACGCTTTCTTGGAGAAAACGAAGAGATACgccactttttctctttttctttagaaGAACAAACAGAAAGAACACGTCTTTTtgactttaaatacattttccctcgctcttttttttttccgagAACAAAAATgacttcacacacacagcttagaCTCCCCTTAAAGTCCATGGATGTCCGGATCCCCACCGTTTTTTCCCCCTTTAGTTTGTTTCGGGGGGCCGGGAGGAGCAGTTAGTAGGCCATTTTATGTACACCCTAATAAAACAGGagtattattatcatcattattcaAAATAATAACAGGAAACTGCCCCAGCGTTTTGCCTGTGTAAGGGGAGGTGTACTTGTTTTAAAAACGTCcttgtataaataatacaaatcatAATTAtcaataatacatatttatatatttaagagtGTGCGTGGAACATAGCATTCAAAGCTCCCCTCCGCCAGAAGCTGCAGAAGGCCCGAGAGGCTCAAACCCTGTTCACATTGGCACAGACTCTATCCTTCTTCATCTACACACATTCTCactcgctctcactctctctctgtcgctctctcactctctctctctctctctctctctctctctcacgtttcactctgcttcatttttttctcctcttccaCTGAGGAGTTTTTAcatgatacaaaaaaagaaaagaaaaaagtaaaaggaaAATGGAAAgtgtcacagaaaaaaaaaaattaaaacattttcaagttaCGATGCAACAGCCCAGAACACTGCTttgctcctcacacacacaccgtgtTAGGAAAAATGGTACATTCTGACTTCCTGCCGCTCTGGCGTCTGCAAATGGTTCAGTCCATGCTTCCAACACGAAGCACGCTTTAAACCTCCACCCACCCTAAGCCTTGTTGCTCAGGGTCAGCAGCTCGATGAAGGAATTGAAGAGGGTCTCCAGCCAGCCCTGATTGGCCATACACTGCTGGACCACCTCCTCCTGACCGGGGTCCTCTGCTGCCTGCTCTATACTGTccgtctgagagagagagagagaaaaggagaaataaaGTGTCCTGAACTGGGATGACG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU14450 True 1366 lncRNA 0.42 2 15136544 15163835

Neighbor

gene id symbol gene type direction distance location
LOC103046681 LOC108427369 coding upstream 2175 15117166 ~ 15134369 (+)
polr3d polr3d coding upstream 114723 15014840 ~ 15021821 (+)
rcn3 rcn3,LOC107730752,LOC107689660,LOC107583008,LOC107554106 coding upstream 131692 14996132 ~ 15004852 (+)
LOC103043011 tspan4b,LOC108427360,LOC107729542,LOC107658498,LOC107554115,LOC107730770,LOC108280533 coding upstream 200398 14925107 ~ 14936146 (+)
LOC103042699 NA coding upstream 216808 14914028 ~ 14919736 (+)
prmt1 prmt1,LOC107729532,LOC107658485,LOC107689671 coding downstream 108909 15272744 ~ 15278422 (+)
LOC103025681 NA coding downstream 577337 15741172 ~ 15747723 (+)
rnf113a rnf113a,LOC106606873,LOC107693494,LOC106601610 coding downstream 802130 15965965 ~ 15977033 (+)
LOC103033944 LOC103033944 coding downstream 873973 16037808 ~ 16040212 (+)
limd2 limd2,LOC107721965,LOC107674139,LOC107658411 coding downstream 882419 16046254 ~ 16080694 (+)
G10711 NA non-coding upstream 23896 15108977 ~ 15112648 (+)
G10699 NA non-coding upstream 47447 15087928 ~ 15089097 (+)
G10697 NA non-coding upstream 49351 15075340 ~ 15087193 (+)
G10698 LOC108427365,LOC108280300 non-coding upstream 80753 15052200 ~ 15055791 (+)
G10694 NA non-coding upstream 85657 15049389 ~ 15050887 (+)
G10720 NA non-coding downstream 29963 15193798 ~ 15231915 (+)
G10822 NA non-coding downstream 121880 15285715 ~ 15286735 (+)
G10826 LOC108427385,LOC100528069,LOC108427383,LOC106526789,LOC108274011 non-coding downstream 507776 15671611 ~ 15713400 (+)
G10843 NA non-coding downstream 587673 15751508 ~ 15753268 (+)
G10865 NA non-coding downstream 700007 15863842 ~ 15921430 (+)
G10510 smg1,LOC107729485,LOC107583093 other upstream 729103 14404403 ~ 14407441 (+)
LOC111193423 arl6ip1,LOC107658451 other upstream 737849 14314792 ~ 14398695 (+)
G10503 tceb2,LOC103036770,LOC108427344,LOC107564001,LOC108280902,LOC105012960 other upstream 765026 14361865 ~ 14371518 (+)
LOC103036470 NA other upstream 814684 14316407 ~ 14321860 (+)
G10450 LOC103035240,LOC108427335,LOC107732842,LOC107674167,LOC107563993,LOC107732871,LOC107658445,LOC107729508,LOC108280773 other upstream 972438 14117612 ~ 14164106 (+)
G10825 syt5a,LOC108427381,LOC107658481 other downstream 486447 15650282 ~ 15655338 (+)
G10838 NA other downstream 594927 15758762 ~ 15769243 (+)
G10879 NA other downstream 789011 15952846 ~ 15960378 (+)
ddx42 ddx42 other downstream 847859 16011694 ~ 16035284 (+)
ccdc47 ccdc47,LOC107674171,LOC107658463,LOC107729550,LOC107721963 other downstream 1060886 16224721 ~ 16300667 (+)

Expression


Co-expression Network